Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00568 ATGGAGGGTGGAAATGAGGAGTTGGAGATGGGAGGGTCTAATGGGGTTGCAGCGAGTTCACGGTGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAACCTGTATAAGCAGGGAATAAAGACTCCCAGTGCTGAGGAGATACAACAGATAACTGCTAGGCTTAGGGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCTAGGCAGAGACAGAAGCAGAAGCAAGAAACCATCGCTTACTTCAATCGCTTTCTGCATACTCCCCAGCCCTTTTTTTCTCCGCCAATTTGCCCAAATGGCCTGTGCCCCCCATATTGCATACCTCAGGCACAGAGTGAAAATGGGTTTTATCCCCTACATCCAAAGGTGCTTGTACCCGTAGGTTTTAGGAGGAGCCCATCTGAGATATTTGTGCCCACAGACATGTCAAACATGATGAGTAATGGCCCGCTGGTATACGAAGGCATGCAACAGAGAATCTCGGATTGTAACTTCAGCTACAGTAACCAAGAAACGTTGGATCTCTTTCCTCTGCACCCAACTGGTATTTTGGAAGGGAAAACAACATACCAGGTGTCTTCTCTGGCTTCAGTTTCTGCTGATAGTTCCACTGATACACCTTCTGCGCCTTCGCCTGATATCAATGAAGATGATCCTTCCCCACTAAACCAACCCTTCTTTGATTTTTTTACTACTTCTGGACAAGCTTCTTAA 738 0.4607 MEGGNEELEMGGSNGVAASSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHTPQPFFSPPICPNGLCPPYCIPQAQSENGFYPLHPKVLVPVGFRRSPSEIFVPTDMSNMMSNGPLVYEGMQQRISDCNFSYSNQETLDLFPLHPTGILEGKTTYQVSSLASVSADSSTDTPSAPSPDINEDDPSPLNQPFFDFFTTSGQAS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00568 245 Pfam Homeodomain 19 79 IPR001356 GO:0003677
Lapu11g00568 245 Gene3D - 19 87 - -
Lapu11g00568 245 MobiDBLite consensus disorder prediction 1 20 - -
Lapu11g00568 245 CDD homeodomain 21 81 IPR001356 GO:0003677
Lapu11g00568 245 MobiDBLite consensus disorder prediction 203 221 - -
Lapu11g00568 245 FunFam WUSCHEL-related homeobox 4 19 86 - -
Lapu11g00568 245 SMART HOX_1 17 84 IPR001356 GO:0003677
Lapu11g00568 245 ProSiteProfiles 'Homeobox' domain profile. 15 80 IPR001356 GO:0003677
Lapu11g00568 245 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 9 213 IPR044555 GO:0003700|GO:0099402
Lapu11g00568 245 MobiDBLite consensus disorder prediction 203 235 - -
Lapu11g00568 245 SUPERFAMILY Homeodomain-like 20 86 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00568 Lapu-Chr11 8983819 8985282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00568 15 239 Wox Gene Family AT5G59340 44.980 3.22e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lapu11g00568 Homeodomain 5.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00568 - - pvu:PHAVU_011G064900g 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00568 11 8983819 8985282 Lapu11g00568 11 8983819 8985282 ECH