Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00557 ATGTCTGCAGCTCTGGATTTGACGCTCGATGACATAATCAAGAACAACAAAAAATCTGGATCCGGAAGCTTCCATGGCCGGAGCCGACCATCCGGATCCGGACCTTCACGCCGCTTCCCCAACCGTGCGGCCAACCGCGCCGCTCCTTATGCCGCCGCCAAGGCGCCCGAGGCTACTTGGAAGCACAATTTATATGCAGATCAGTACATGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCTTGCGTCTTCTATAGAAACTGGGACCAAACTTTACATTTCTAACTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATGGGGTTCATTACGACAGGAGTGGAAGATCGAAGGGTACGGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAATTAGATGGCAAACCAATGAAGATAAAGATTGCGGGTACAAACATTTCTACACCTGGTGTTCCTGCTGCAAACAGAGCTATTGGAAATTTGAATGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGTATTAAGAAAGTCAGGAGGAAGAGGACAAGGCATTAGAAGGGAACAAGGTCGAGGAAGTGTTCGTGGTGGAGGAAGACCTGCTGAAAAATTATCTGCAGATGATCTAGATGCGGATCTGGAGAAGTACCATGCAGAGGCCATGCAATTGAACTGA 738 0.4797 MSAALDLTLDDIIKNNKKSGSGSFHGRSRPSGSGPSRRFPNRAANRAAPYAAAKAPEATWKHNLYADQYMAAAGYPAQGGLASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIKIAGTNISTPGVPAANRAIGNLNVPRSGQGRGGVLRKSGGRGQGIRREQGRGSVRGGGRPAEKLSADDLDADLEKYHAEAMQLN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00557 245 SMART rrm1_1 90 162 IPR000504 GO:0003723
Lapu11g00557 245 MobiDBLite consensus disorder prediction 187 231 - -
Lapu11g00557 245 Coils Coil 227 245 - -
Lapu11g00557 245 SMART FoP_duplication_2 176 245 IPR025715 -
Lapu11g00557 245 SUPERFAMILY RNA-binding domain, RBD 80 194 IPR035979 GO:0003676
Lapu11g00557 245 MobiDBLite consensus disorder prediction 14 30 - -
Lapu11g00557 245 FunFam THO complex subunit 4 82 232 - -
Lapu11g00557 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Lapu11g00557 245 MobiDBLite consensus disorder prediction 14 52 - -
Lapu11g00557 245 Gene3D - 78 223 IPR012677 -
Lapu11g00557 245 CDD RRM_THOC4 89 163 - -
Lapu11g00557 245 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 243 - -
Lapu11g00557 245 Pfam C-terminal duplication domain of Friend of PRMT1 188 239 IPR025715 -
Lapu11g00557 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00557 Lapu-Chr11 8904802 8909106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00557 88 164 Eukaryotic Initiation Factors Gene Family AT2G23350 36.364 1.23e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00557 K12881 - gmx:100775827 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00394 5 3258806 3263670 Lapu11g00557 11 8904802 8909106 PCT