Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00554 ATGATGGTTCAGCTCAAATGTTCAATTTTAACTGGGAGTTTTTTTTTTTTTTGGAACGAAGGGCTGTCCTGGGATACCAATGAACCGATTCTGAGAGATGCCTTTAAGCAGCACGGTGAAATCACTGAAGGATTATTTTTTTTTTCTTTTGCAGTTAGAGTAATATGTGATCACTTGAATGGGAAATCAAGAGGTTATGGATTTGTGCGGTTTGTTTCTGAAACTGCAGCTGCTACTGCTCGCAAAGAAATGAATGGCAAGATACTGGATGGCAGACGCATTCGGGTTAGTTATGCACACGAAGGCTAG 309 0.4045 MMVQLKCSILTGSFFFFWNEGLSWDTNEPILRDAFKQHGEITEGLFFFSFAVRVICDHLNGKSRGYGFVRFVSETAAATARKEMNGKILDGRRIRVSYAHEG* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00554 102 Gene3D - 18 102 IPR012677 -
Lapu11g00554 102 SUPERFAMILY RNA-binding domain, RBD 21 101 IPR035979 GO:0003676
Lapu11g00554 102 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 95 IPR000504 GO:0003723
Lapu11g00554 102 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 101 IPR000504 GO:0003723
Lapu11g00554 102 SMART rrm1_1 21 97 IPR000504 GO:0003723
Lapu11g00554 102 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00554 Lapu-Chr11 8887028 8889485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00554 22 99 Eukaryotic Initiation Factors Gene Family AT3G11400 39.744 1.58e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00554 K13195 - gmx:100306540 127.487