Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00550 ATGAGTAATTGTTTGATGTTACTGGGCAAAGTTGGTGAAGACCCATCAAGAGAGGGTGTTGTAAAGAGTGGTGAATTTAAGTGCAAGACTTGTAACAAGCAATTCTATTCGTTTCAAGCCCTTGGAGGTCACCGAGCTAGCCACAAGAAGCTAAAACGCATGGCTTCAAACATTTCGTGTGCGGTGGTGACACCAAAATTGCACCAATGCTCAATTTGTGGACTTGTATTTGATATTGGACAAGCTTTGGGAGGACATATGAGAAAGCATAGAGTCTCTTCAAATGGTACATTGCCAATTCATGACCAAGATGTGCCAAAATCTAATGCCACTAAAAAGCTTCGTTTGTGGTTGGACTTGAACTTGACACCTTACGAGAATGATTTGCAATAA 393 0.4097 MSNCLMLLGKVGEDPSREGVVKSGEFKCKTCNKQFYSFQALGGHRASHKKLKRMASNISCAVVTPKLHQCSICGLVFDIGQALGGHMRKHRVSSNGTLPIHDQDVPKSNATKKLRLWLDLNLTPYENDLQ* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00550 130 Gene3D Classic Zinc Finger 23 90 - -
Lapu11g00550 130 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Lapu11g00550 130 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Lapu11g00550 130 Pfam C2H2-type zinc finger 68 91 - -
Lapu11g00550 130 Pfam C2H2-type zinc finger 26 50 - -
Lapu11g00550 130 PANTHER ZINC FINGER PROTEIN ZAT5 20 127 - -
Lapu11g00550 130 SUPERFAMILY beta-beta-alpha zinc fingers 26 90 IPR036236 -
Lapu11g00550 130 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Lapu11g00550 130 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Lapu11g00550 130 SMART c2h2final6 26 48 IPR013087 -
Lapu11g00550 130 SMART c2h2final6 68 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00550 Lapu-Chr11 8864202 8864730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00550 1 128 C2H2 Transcription Factor Family AT2G28710 45.324 1.36e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g00550 zf-C2H2_6 4.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00550 - - gmx:112998408 186.422