Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00548 ATGGAGCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGGAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTACTGGAGGACTCACATGAGGAAAAAGAAGGCTCTAGAGAAAAAACGAGCCTCATCATCCTCATCATCCTCATCATCACCTGTGTCTTCTAGTTCTCTATCTTCACTATCCTCAAACAACCATGCTGTGGATTCACATGCTTCCAAAGAGGTTGGAGAGGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGGGGTTGATGGGTGCAGGAGAAGAGGAAGGTGGTGAAAAGGGGTACTCTCTGGATGATATATGGAAAGATATTGTTATGTCAGAAGAAAACGACATGAATAATATTCTGCAACCTGTGTATGAATGGCACAGCGAAGAGGGATGCAACCTCTCTTGTCCACCTGCAATGATGCATTCTCCATCATTATGGGAGTACAATTCTTCTCACCCTCTATGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTGCTCACCACATTAAGTGACCAATACTATTCCTGCTATGAACAAGGGAATGCATTTCTAACTGGCTAA 597 0.4288 MELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKALEKKRASSSSSSSSSPVSSSSLSSLSSNNHAVDSHASKEVGEESFYDTGGYDDMMGLMGAGEEEGGEKGYSLDDIWKDIVMSEENDMNNILQPVYEWHSEEGCNLSCPPAMMHSPSLWEYNSSHPLWVMDEEESNKMLLTTLSDQYYSCYEQGNAFLTG* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00548 198 Gene3D - 1 60 - -
Lapu11g00548 198 MobiDBLite consensus disorder prediction 35 82 - -
Lapu11g00548 198 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
Lapu11g00548 198 Pfam Myb-like DNA-binding domain 2 33 IPR001005 -
Lapu11g00548 198 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 63 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lapu11g00548 198 CDD SANT 2 34 IPR001005 -
Lapu11g00548 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Lapu11g00548 198 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
Lapu11g00548 198 MobiDBLite consensus disorder prediction 45 73 - -
Lapu11g00548 198 SMART sant 2 36 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00548 Lapu-Chr11 8839841 8841638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00548 1 191 MYB Transcription Factor Family AT3G46130 47.644 2.95e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu11g00548 Myb_DNA-binding 5.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00548 K09422 - gmx:100776886 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00548 11 8839841 8841638 Lapu5g00406 5 3354144 3355659 PCT