LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu11g00546	ATGAGCATGGTCTCACCTCATTTCTTCCTCCTTCAGCTCCTATTTACATTTTGCTTTGTCTGTTTAGCTTTTGGAGCCACTCTGCCAGAAGATGAAGTGCAAGCTCTGAAAGACATAGGTGAGACACTGGGGAAGAAGGATTGGGATTTCAGTGTTGATCCATGCAGTGGAGAACACAATTGGACATCACGTACTAAAGTGAGAGGGACAGAAAATGATGTCACCTGTGATTGCTCCTTTGAGAATGCCACAATCTGTCATGTTACTAACATAGTTTTGAAAGTACAAAATCTCCGAGGCTCTCTCCCTGTAGCAATGGTTAGGTTGCCGTACCTTCAAGAAATTTCTTTGAGTGCTAATCGACTAACGGGTTCAATCCCACCAGAGCTAGCAAACATCTCTACTCTCCAAAGTTTGACCCTTGAATTCAACCAACTCTCTGGAAATCTTCCTGGTGAGCTTGGGAATCTTCCAAATATTCAAAGATTGCTACTTACCTCCAACAATTTTACTGGAGAGTTACCTGCAACGTTTGCAAGACTCACTACCTTGCAGGAAGTTCGATTAGGGGACAACAAGTTCTCTGGAACGATACCTGATTTTATTCAAAGCTGGACAAGTCTCCAGAAGCTAGTGATTCAAGGAACTGGATTACGTGGGCCAATTCCTTCTGGAATTTCACTACTTGAAAGTTTAACAGACTTGTATGTAGGGAGAATTAGTGACATAAACGGATCTGATTATTTTCCTTTTCCCCAACTTAACAATCTGGCAAATTTGGAAATTTTAATTCTGAGGAGTTGCAATATTAATGGAACAATACCTGAATATCTCGGGACTATGTCTAGCTTACAAACCTTAGACCTCAGCTTTAACAAATTAAGTGGACAAATTCCAAGCAGCTTTGAGTATGGTCTTAGAAAGACAGATTATATATATTTAACTGGAAACATCCTCACGGGACCAGTACCTGCATGGGCAGAGAAAGAAAAAAATGTAGATCTTTCATACAATAACTTTAGCATGGAAAACTCAGGGCAGCAGTCATGTCAACAGGGAAATGTGAACTTGTTTGCAAGCTCCTCGATGGACAATAGCTCAGCATCCATTTCATGTTTAAAAAGTGTTGGCTGTCCTAAAAAATACCTTTTACTCACTAATCTGATTGTCGCAGTATCATACTCTCTTCATATAAATTGTGGTGGAAAGCAAGTAACAGTCGGTGGAAGTGAAACATATGATGAGGATACAGATAATGCAGGACCAGCTAGATTCCACCTAAGTGGAAAAAACTGGGGACTTAGCAGCACTGGTCACTTCTTGGATAATGACCGTGCAGAGTATTATATTTGGCTAAATCAATCTAAGCTTTTCATGGCTGATGCTGAATTATACATGGATGCACGTGTTTCTCCCATTTCTCTTACTTATTATGGATTTTGCCTGGGAAATGGAAACTACACAGTGAATCTACGCTTTGCAGAGGTCATGTTTACTGAAGATCAAACATATAACAGTCTGGGAAGGCGCATATTTGATGTCTACATTCAGGGAAATATGGTGCTTAAGGATTTCAATATTGCAGAAGAAGCAGGAGGAGTTAATAAAGCAGTCACAAAATCATTTACCATTGTGATTAGTAGTAACACATTGGAAATCCGCCTATATTGGGCCGGGAAAGGGACAGTTAGTATACCATTTAAATCAGTGTATGGTCCTCTTATATCAGCTATTTCTGTAAATCCCAACTTCATCCCTCCCACAGAAAACGGAAGTAGCATGTCTGCAGGTGCTGTGGTTGCAATTGTGGCTGGTGTAGTAGTTTTTCTAGTCCTGGTATTTGGTATACTTAGGTGGAGAGGCTGTCTAGGACAGAAAAGTTCTTTAGCAAAAGAGCTAAAGGGTTTAAAACTGCAAATGGGTATATTTACCTTACGACAAATCAAAGCAGCAACAGATAACTTCAACAAAGCCAACAAAATTGGAGAAGGAGGGTTTGGTCCTGTGTACAAGGGAAATTTATCGGACGGGACAATAATAGCAGTCAAGCAACTTTCTTCTAAATCAAGACAGGGCAATCGTGAGTTTATAAATGAGCTAGGCATGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTATGGCTGCTGTGTCGAGGGAGATCAATTACTGTTGGTCTATGAATATATGGAAAACAATAGCCTTGCTCGCGCTTTGTTTGGTCCAGAAGAACACCAGATAAAATTGGATTGGCCTACAAGGCAAAAGATCTGTGTTGGTATTGCCAAAGGTTTGGCATACCTCCATGAAGAATCGAGATTAAAAATTGTTCATAGGGACATCAAGACCACTAATGTGTTGCTTGATAAAGATCTCAAACCAAAGATATCTGACTTTGGTTTAGCCAAGCTCGATGAAGAGGACAATACCCACATAAGCACCCGAATTGCGGGAACTTATGGATACATGGCTCCCGAGTATGCCATGCATGGTTATCTGACTGACAAAGCAGATGTTTATAGTTTTGGAATAGTTGCCTTGGAAATTATAAGTGGGAGGAGCAATATGATTCAACGACACAAAGAATCATCATTACATCTCCTTGATTGGGCATATATGCTTAAAGGGAGTGGTAATCTAATGGAGCTAGTTGATAGAAGATTGGGTTTGGACTTTAACAAAAAGGAAGTTACCACAATGATCAATGTGGCACTTCTATGCGCCAATGCCACTGCCTCCCTCAGGCCTACAATGTCCTCAGTGGTAAGCATGCTAGAAGGTAGATCTGTTGTTCAGGAGTTGATTTCAGAGTCAAGTGAGGCATTGGATGAGAAGAAGTTGGAAGCAATGCGACAACATTACCAAGAGATAGAAGAACATAATTTAAGTGAGATCAGTAATCAGAGTCACTCAGTGGATGACACATTGGCCTCTTCATCTATATTTGCAACAGATCTATATCCTCCTGTAAACATGAATTCTTCCTACTGGGAGAAAAGGGGTTGGTGA	3012	0.4041	MSMVSPHFFLLQLLFTFCFVCLAFGATLPEDEVQALKDIGETLGKKDWDFSVDPCSGEHNWTSRTKVRGTENDVTCDCSFENATICHVTNIVLKVQNLRGSLPVAMVRLPYLQEISLSANRLTGSIPPELANISTLQSLTLEFNQLSGNLPGELGNLPNIQRLLLTSNNFTGELPATFARLTTLQEVRLGDNKFSGTIPDFIQSWTSLQKLVIQGTGLRGPIPSGISLLESLTDLYVGRISDINGSDYFPFPQLNNLANLEILILRSCNINGTIPEYLGTMSSLQTLDLSFNKLSGQIPSSFEYGLRKTDYIYLTGNILTGPVPAWAEKEKNVDLSYNNFSMENSGQQSCQQGNVNLFASSSMDNSSASISCLKSVGCPKKYLLLTNLIVAVSYSLHINCGGKQVTVGGSETYDEDTDNAGPARFHLSGKNWGLSSTGHFLDNDRAEYYIWLNQSKLFMADAELYMDARVSPISLTYYGFCLGNGNYTVNLRFAEVMFTEDQTYNSLGRRIFDVYIQGNMVLKDFNIAEEAGGVNKAVTKSFTIVISSNTLEIRLYWAGKGTVSIPFKSVYGPLISAISVNPNFIPPTENGSSMSAGAVVAIVAGVVVFLVLVFGILRWRGCLGQKSSLAKELKGLKLQMGIFTLRQIKAATDNFNKANKIGEGGFGPVYKGNLSDGTIIAVKQLSSKSRQGNREFINELGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEHQIKLDWPTRQKICVGIAKGLAYLHEESRLKIVHRDIKTTNVLLDKDLKPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIISGRSNMIQRHKESSLHLLDWAYMLKGSGNLMELVDRRLGLDFNKKEVTTMINVALLCANATASLRPTMSSVVSMLEGRSVVQELISESSEALDEKKLEAMRQHYQEIEEHNLSEISNQSHSVDDTLASSSIFATDLYPPVNMNSSYWEKRGW*	1004

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu11g00546	1003	Pfam	Leucine rich repeat	259	317	IPR001611	GO:0005515
	Lapu11g00546	1003	SUPERFAMILY	L domain-like	73	325	-	-
	Lapu11g00546	1003	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	731	938	-	-
	Lapu11g00546	1003	Pfam	Malectin domain	395	578	IPR021720	-
	Lapu11g00546	1003	ProSiteProfiles	Protein kinase domain profile.	655	907	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu11g00546	1003	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	393	583	-	-
	Lapu11g00546	1003	Gene3D	Transferase(Phosphotransferase) domain 1	731	943	-	-
	Lapu11g00546	1003	SMART	serkin_6	655	926	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu11g00546	1003	Pfam	Protein tyrosine and serine/threonine kinase	658	926	IPR001245	GO:0004672\|GO:0006468
	Lapu11g00546	1003	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	777	789	IPR008271	GO:0004672\|GO:0006468
	Lapu11g00546	1003	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	17	958	-	-
	Lapu11g00546	1003	Gene3D	Ribonuclease Inhibitor	243	358	IPR032675	-
	Lapu11g00546	1003	Gene3D	Ribonuclease Inhibitor	29	242	IPR032675	-
	Lapu11g00546	1003	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	624	730	-	-
	Lapu11g00546	1003	Gene3D	Phosphorylase Kinase; domain 1	623	730	-	-
	Lapu11g00546	1003	CDD	STKc_IRAK	661	928	-	-
	Lapu11g00546	1003	FunFam	Nuclear pore complex protein NUP107	36	200	-	-
	Lapu11g00546	1003	Gene3D	-	391	583	-	-
	Lapu11g00546	1003	SUPERFAMILY	Protein kinase-like (PK-like)	639	931	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu11g00546	Lapu-Chr11	8818990	8827801	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu11g00546	19	975	Receptor kinase-like Gene Family	AT1G53420	52.923	0.0	972

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lapu11g00546		PK_Tyr_Ser-Thr	2.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu11g00546	-		-	gmx:732563	1326.61