Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00544 ATGTCTTCTGATTCTGCTAAACTCAATAACCCTGCGCAATGGAAAGTCGAAGAGGTGGTTTCAATAATTATAGTATGTGTTATCTTTTTTACACTGAGTGATTGCTTCGGCATATTCAAGCGTCTGTTGTGTGGAATTTGCCGAGGTAGAAACCAGGTTCAAAGGCGGCTTCTAGACGAGACCGTTCCCGATGATGATCCTTCCATGCAGGTTCAAAGCCGAGGATTGGAGTTCTGTGTGGTGCAGTCTCTTCCAACGATTGAGTTCAAGAAAAACGAGGGAGAACAAGAGAAGGGAAGTAACGTGGAATGTGCCATTTGTCTTGGAGAGTTTGAGGATGGGGAGTGGCTGAAACATCTTCCACAATGCAGCCACAGCTTCCATGTTTCATGCATTGACACTTGGTTTCAGTCTCATTCAAATTGTCCTCTTTGTAGAGCATTTGTGCATCATCACATGCTACAGTGTTCCGTAGCTGCTTCTCACACATTGCTACAGCCTTTGAGGAGGGAGGACTTTGAAAGGGAAAATCTGCCTAACACACAACAACAACATCAACAT 561 0.4439 MSSDSAKLNNPAQWKVEEVVSIIIVCVIFFTLSDCFGIFKRLLCGICRGRNQVQRRLLDETVPDDDPSMQVQSRGLEFCVVQSLPTIEFKKNEGEQEKGSNVECAICLGEFEDGEWLKHLPQCSHSFHVSCIDTWFQSHSNCPLCRAFVHHHMLQCSVAASHTLLQPLRREDFERENLPNTQQQHQH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00544 187 SMART FANCL_C_2 100 154 - -
Lapu11g00544 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
Lapu11g00544 187 FunFam E3 ubiquitin-protein ligase ATL6 65 152 - -
Lapu11g00544 187 Pfam Ring finger domain 103 146 IPR001841 -
Lapu11g00544 187 SMART ring_2 104 145 IPR001841 -
Lapu11g00544 187 CDD RING-H2_EL5-like 103 146 - -
Lapu11g00544 187 PANTHER RING-H2 FINGER PROTEIN ATL16 19 159 IPR044600 GO:0016567|GO:0016740
Lapu11g00544 187 SUPERFAMILY RING/U-box 83 152 - -
Lapu11g00544 187 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00544 Lapu-Chr11 8807971 8808531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00544 22 149 C3H Transcription Factor Family AT1G76410 39.844 4.45e-24 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00544 - - gmx:121172630 289.271