Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00516 ATGAACAATAATGTTGGGAAAAGGAAAAGAGGTTTGGCAGAACACAATCATATGATTTTTGACAAAAGGAGTCTCAATTGCGGATTAGTCAATGGAGGGGTAAGTTCTGGATCATCAACAGAAGATGACACAAGATTTAATAAGCTGACTGAAGATGGAAACAATCGGTTAAGGGGTCTGATTCAAATCAATGGGAGCTTGCAGGTTTCACAGCAACCACCTCAAGGGCCAGTCGTATGCTGGGAGAGATTTCTCCCTGTGAGATCAATAAAAGTTTTGCTGGTGGAAGATGATGATTCAACACGCCATGTTGTGCGTGCTCTGTTGCGCAATTGTAGTTACGAAGTTACTGCTGTTTCCAATGGTCTTCAAGCATGGAAAGTCCTAGAAGATCCAGAAAATTGCATTGGTCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAATCACAAAACTCTGAAGAATATCCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATTGTCTTCAAGTGTTTGTCAAAAGGTGCTGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAATCTCTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGCGACCTACACCAGAAAATCTGCAAAGTCAAGAAGTAATGATGCTTCTGAAAACAATACTGACAGCAGTGACGACAATGACTATGGAAGCAAGGGCTTGAGCATTCGAGATGGAAGTGGCACTCAGAGTTCGTGGACTAAATGTCTGGCTCAAGTTGGCAGTCCTCATCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCGGATAGTACTTGTGCCCAAGTGATGCAAACAAAGACTGAAAAACTTGGTAGTAGATGGGTGCATGCAACAGAAAAAGAATGCCTTGAACTTATTGATCATCTTGATGATGTTGCAATGGGCAAGGACTTGGCTGTGGGAATATCTTTGAATATGCAACTAGAGCATCGACTTGAGGGACTGTCTAGCCATCCAATGGGTAAGGGGGCAAATAAAATGCCTGATGTTGATGATATGCAAATAGTTAAAGGACAGAGTAATGCCTGTGAAAAAGGACAACTGGAATACAATGGTGGTAAAACCAGGACACAGGAAAATCAGACTATGAATGTTATTGATTTTACTGATAGCAATAGTCCACAAGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTTTCTGGTTTTTCACTAACAAAAGAAAACTGTTGCCCCAAAGAGCATCCATCTCTGGAACTAACTTTGAAAAGGCTGGGAGAAGTAAGAGATGCTAAAAATGTCACAGGTGAAGAATGCAATGTGTTGAGACATTCAGACCAGTCAGCATTCTCAAAGTATAATACTGCTTCTTCTGCTAACCAGGCTCAAACCGGAAATGTAGGAAGCTGTTCTCCACTAGCCAATGGCTCAGCTGCACCAAATGCAGAGGTAATGCACAACTTTCCATCTCATTCAAATGTCACTCCTCCAAACCAACAATCTAATGGGAGCAACAACATCAATGACATGGCCTCCACTAATACATACCTTGGCCCCAAACCTTGTACTTTTGACAAGAAGCCAGAGTGTATAAGAGGGATGGGCTCATTTAATTCCTCTGAACTCCAAACGTTGCCCAACAATAGTATCTCTTCGTCTCAGAAGAAAACTTATGCCCGGGAAGAATATATGGAAATTGTCAGAGGACAAGTGGGAGGCTCTGAACATGAATTCCAAGTCGAGCACACTCATTATGAGCTTCACCATTATAATCACACTTCCCATAAAGCTGCAGTAGATCTCCAATCAGATCACGATCTCTTACTCAAAAGCTCAACCAACCCTGCTCAACAATGTGTATCATCAAATGCATTTGGAGGGCCAGCAGAAAGTAATGCTGCAAACTACACAGTAGATGGAAATGCTGTGGAGAGTGACCATGGGAGCAATGGACAGGACGGAACCTTGACAATGAGGACAGTAAATGTGGAAAATGGCAATGTGGCTGCTGGGAGCATTGGAGTTGGTGGCATTGACAGGATAAACATTGGGAATGGTGCAGATGAAGGACGACTTGCATTGAGAGAGGCTGCTTTGACCAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAAAGGGTTCGATATCATAGTAGGAAAAAACTAGCAGAACAGCGGCCTCGTATTAGGGGACAATTTGTTAGACGGATAGTGTCTGAATCCAAAGAAGAAAAAGATCACCAAAGTGACAACCTGGTACCTGGGGATAATAGCGACATTCCTCAATAA 2358 0.422 MNNNVGKRKRGLAEHNHMIFDKRSLNCGLVNGGVSSGSSTEDDTRFNKLTEDGNNRLRGLIQINGSLQVSQQPPQGPVVCWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKVLEDPENCIGLVLTEVAMPILSGIGLLCKIMNHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATYTRKSAKSRSNDASENNTDSSDDNDYGSKGLSIRDGSGTQSSWTKCLAQVGSPHPVSPHKQLVDAPDSTCAQVMQTKTEKLGSRWVHATEKECLELIDHLDDVAMGKDLAVGISLNMQLEHRLEGLSSHPMGKGANKMPDVDDMQIVKGQSNACEKGQLEYNGGKTRTQENQTMNVIDFTDSNSPQAESRDLNTPNGFSGFSLTKENCCPKEHPSLELTLKRLGEVRDAKNVTGEECNVLRHSDQSAFSKYNTASSANQAQTGNVGSCSPLANGSAAPNAEVMHNFPSHSNVTPPNQQSNGSNNINDMASTNTYLGPKPCTFDKKPECIRGMGSFNSSELQTLPNNSISSSQKKTYAREEYMEIVRGQVGGSEHEFQVEHTHYELHHYNHTSHKAAVDLQSDHDLLLKSSTNPAQQCVSSNAFGGPAESNAANYTVDGNAVESDHGSNGQDGTLTMRTVNVENGNVAAGSIGVGGIDRINIGNGADEGRLALREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVSESKEEKDHQSDNLVPGDNSDIPQ* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00516 785 MobiDBLite consensus disorder prediction 758 785 - -
Lapu11g00516 785 Pfam Response regulator receiver domain 92 203 IPR001789 GO:0000160
Lapu11g00516 785 MobiDBLite consensus disorder prediction 758 775 - -
Lapu11g00516 785 FunFam Two-component response regulator-like PRR37 90 248 - -
Lapu11g00516 785 ProSiteProfiles CCT domain profile. 717 759 IPR010402 GO:0005515
Lapu11g00516 785 PANTHER TWO-COMPONENT RESPONSE REGULATOR 91 287 IPR045279 GO:0009736
Lapu11g00516 785 SMART REC_2 90 205 IPR001789 GO:0000160
Lapu11g00516 785 Gene3D - 89 255 - -
Lapu11g00516 785 SUPERFAMILY CheY-like 88 214 IPR011006 -
Lapu11g00516 785 Pfam CCT motif 717 758 IPR010402 GO:0005515
Lapu11g00516 785 CDD psREC_PRR 92 195 - -
Lapu11g00516 785 ProSiteProfiles Response regulatory domain profile. 91 209 IPR001789 GO:0000160
Lapu11g00516 785 MobiDBLite consensus disorder prediction 213 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00516 Lapu-Chr11 8512673 8534699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00516 37 301 Response Regulator Gene Family AT5G60100 60.215 1.87e-89 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lapu11g00516 Response_reg 5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00516 K12129 - gmx:100785796 1118.22