Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00506 ATGGATCCTTCTACTGGACAACATCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCAGAACAAGCTCTAAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCTGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCCTCAACATCAAAGAGAATCCAAGATCAAGGATTCACACCCAATCCCAGCAACCCACTCACTGGCCTTCCTTCATTGTCTTATGACTCCAGTGACCTCACTCTTGCATTAGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAGCATGACTTCTCAATTTTGGGGAACCCCACAAGCACCCCATGTGATATCCTTGGCAACCCTGGCATGCACCACTCTTCCACAAACCCAGGGTTCTTGGATGCCCTTAGAAGTGGGTTCATCGGAAGCCAAAGCAATATTCAGAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGGGTTGGGGTTAGTGGAGAGATGATGCTTCCTTATGATCAAGAAATGAGTGTTGCCACCACCCAAGCAGTGACAGTCACTACCATGAAACAAGAACTTTGCAATGCAAGGGAACAAAGTGAAAGTAGGGTGTTGTGGGGTTTCCCATGGCAACTCAATGGAGACACCAACATGGGTGAGCTTGACTCAGGAAGAGCTAATTGGAATGGTCTCACTTCATCTTGGCATGGACTTCTCAATAGTCCCCTAATGTAG 903 0.4751 MDPSTGQHQQMSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSTSKRIQDQGFTPNPSNPLTGLPSLSYDSSDLTLALARLQKQSCGQLGYDEHDFSILGNPTSTPCDILGNPGMHHSSTNPGFLDALRSGFIGSQSNIQNLYYGYGNGDMGEVDNGNACGGVGVSGEMMLPYDQEMSVATTQAVTVTTMKQELCNAREQSESRVLWGFPWQLNGDTNMGELDSGRANWNGLTSSWHGLLNSPLM* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00506 300 MobiDBLite consensus disorder prediction 83 120 - -
Lapu11g00506 300 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Lapu11g00506 300 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Lapu11g00506 300 MobiDBLite consensus disorder prediction 1 22 - -
Lapu11g00506 300 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Lapu11g00506 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 189 IPR045174 GO:0003700|GO:0006355
Lapu11g00506 300 MobiDBLite consensus disorder prediction 90 120 - -
Lapu11g00506 300 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00506 Lapu-Chr11 8326747 8328806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00506 1 300 C2C2-Dof Transcription Factor Family AT2G28510 39.818 2.16e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu11g00506 zf-Dof 6.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00506 - - gmx:100799737 477.248