Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00505 ATGCGCTGTGTTTTTTTTGTAAAACATCGCGAACAATTCTCAGCTTCTGTATTTTTTTATGTTGTCAGGAAAACACGTGGTATGGGAGCTGCCCGCAAGTTGAAGTCCCACCGCAGAAGGCAGAGGTGGGCTGACAAATCATACAAGAAATCACATCTTGGAAATGAATGGAAAAAGCCATTTGCTGGATCGTCTCATGCTAAGGGCATAGTTCTAGAAAAAATTGGGATTGAAGCTAAACAACCAAACTCTGCTATTAGAAAATGTGCTCGAGTTCAATTAATCAAAAATGGAAAGAAGATTGCGGCCTTTGTGCCAAATGATGGTTGCTTGAACTATATTGAAGAAAATGACGAAGTGCTTATTGCTGGTTTTGGCCGAAAAGGACATGCTGTTGGAGATATTCCTGGAGTTAGGTTTAAGGTTGTGAAGGTATCTGGGGTGTCTCTTCTCGCCCTCTTCAAAGAGAAGAAGGAGAAGCCTAGGTCTTGA 492 0.4167 MRCVFFVKHREQFSASVFFYVVRKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00505 163 NCBIfam 30S ribosomal protein S12 27 162 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lapu11g00505 163 CDD Ribosomal_S23 47 160 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lapu11g00505 163 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 22 163 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lapu11g00505 163 FunFam 40S ribosomal protein S23 46 163 - -
Lapu11g00505 163 SUPERFAMILY Nucleic acid-binding proteins 41 161 IPR012340 -
Lapu11g00505 163 Pfam Ribosomal protein S12/S23 52 162 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lapu11g00505 163 ProSitePatterns Ribosomal protein S12 signature. 80 87 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lapu11g00505 163 Gene3D - 46 163 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00505 Lapu-Chr11 8322505 8325123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00505 24 163 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.714 1.88e-94 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00505 K02973 - psom:113320372 284.263