Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00497 ATGGATTTGGTACCCAGCGTTAAGGAAAAATTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCTAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGAATATTATCGGTTCTCTCAGATGAGCAAGTTTCAAAAATGTGGGCTAAGAAGAATGCTGGTGGAAAGGAACAGGTGGCAAAATTAGTTGATGATACATATAGGAAAATGCAGATATCTGGGGCCACTGATCTGGCATCTAAGGGTCAGGGTGCATCAGATAGCAGTAGTGTAAAGGTGAAAGGTGAAATTGATGATTCCTTTCAACCAGATACAAAGATTCGCTGTTTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAAATGCCATGTGTGGCAACACATCAGTTGCGTTATTATACCAGAGAAACCTACAGAAGGCATCCCACCAGTTCCTGATAAGTTTTATTGTGAACTATGTCGGCTCACTCGCGCTGACCCATTTTGGGTTGCCGTGGCGCACCCTTTGCTTCCGGTGAAGTTAACAACAACCAGTAATCCAACTGATGGAACCAACCCTGTGCAGAGTGTGGAGAGAACATTTCCACTTACTAGAGCAGACAAGGACTTGGTATCGAAACCAGAATTTGATGTAGAGGCTTGGTGTATGCTCCTAAACGACAAGGTTCCATTCAGGATGCAATGGCCGCAATATACAGACCTGCAGGTTAATGGTGTTCCTGTTCGAGCAACTAACAGACCTGGTTCACAGTTGCTTGGAGCTAATGGTCGGGATGATGGCCCAATTATCACGCCATACACAAAAGACGGAATTAATAAGATTTCCTTAACAGGATGTGATACTCGCATTTTTTGTCTAGGGGTGCGTATTGTTAGAAGGCGCAGCATGCAGCAGATCCTAAACTTAATTCCAAAGGAGTCTGATGGTGAGCTATTTCAAGACGCGCTTGCACGCGTGTGTCGTTGTGTTGGGGGCGGAAATGCGGATGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGTGTCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGATTGCGGGAAGATTCAAACCCTGTATTCACATGGGTTGCTTTGACCTTGAAGTTTTTGTGGAAATGAATCAACGATCAAGGAAGTGGCAGTGTCCTATATGTCTCAAGAACTATGCTTTGGAGAATATCATCATTGACCCTTACTTCAATCGCATCACTTCTATGATGGTAAATTGTGGTGAAGAAATTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTGAAGGCAAAGAGTGAAAGTGAACGCCAGGAATTAGGGAATCTAGCACAGTGGCATCTTCCTGATGGATCCCCATGTGCTTCAACTGATGGAGATTTCAAGAGAGTGGATACACTGAAGCAGGTCAAACAGGAAGGTGTTTCTGACAGTCCAACTGGTTTAAAACTTGGCATCAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTAATAAATTGAAAGGGGTTTTTGGAAATCCCGAACAGGTTGTTATTCCAATGAGCAGCAGTGCTACTGGAAGTGGACGGGATGGTGACGATCCTAGTGTAAATCAGGGTGGTGGTGGGCATATTGACTATTCCACTGCAAATGGCATTGAAATGGATTCTCTGTGTCTCAATAGTGTTGATTTGGCATATGAATACACTGTACATGATACTTCTGCTCAGGTGGGTGGTGCAGAAGTTATTGTTCTGAGCGATTCTGAAGAAGACAATGATCTTTTGGTATCTCCTCCAATCGCATATAAGAACAACCGCAATGATGCTACAGATGGTTATTCTGTACAACCACCTGTAATGGTTGATTCATATACTGGAGATCCTAATCTTGGTGGAAATTCATGCTTAGGACTCTTTCCCAATGATGATGATTTTGGAATGTCTTCCCTGTGGTCTTTGCCATCTGGAAGTCAGGCTGGTCCTGGATTCCAACTATTTGGTTCTGATGCAGATGTGTCAGATGCATTGGTCCATCTGCAACATGGTCCTGTGAATTGCTCTTCATCACTAAATGGCTATGCACTAGCTCCTGATACTGCTTTGGGATCTGGTGGTATCTTGCAAGATTCCTCTGCTGGTCGATTGGATGCTGATTTAAATGGTGGTTTGGTTGACAATCCATTAGCATTTGGTGGTGATGATCCCTCACTTCAGATTTTTCTCCCCACTAGACCAGCAGACTCATCTATGCAGAATGAATTAAGAGATCAGGCAAATGTTGCCAATGGTGTCTGCACTGAGGAGGATTGGATATCCCTTAGTCTTGGAGGTTGTGCTGGTGGTAGCAATGGTGATGCTTCTACTCAAAATGGATTGAATTCTAGACATCAAATCCCAACCAGAGAAGTTGGCACAAATACGTTGGATGATACTGCTTCTTTACTCCTCGGAATGAATGATGTTAGATCTGACAGGCCAAGTAGGCAAAGGTCAGATAGTCCTTTCTCATTTCCTCGCCAAAGACGTTCTGTAAGACCCCGCTTGTACCTTTCTATTGATTCGGATTCAGAGTAA 2640 0.436 MDLVPSVKEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAGGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKGEIDDSFQPDTKIRCLCGSRLETEDLVKCDDPKCHVWQHISCVIIPEKPTEGIPPVPDKFYCELCRLTRADPFWVAVAHPLLPVKLTTTSNPTDGTNPVQSVERTFPLTRADKDLVSKPEFDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDTRIFCLGVRIVRRRSMQQILNLIPKESDGELFQDALARVCRCVGGGNADDDADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMVNCGEEITEVEVKPDGSWRVKAKSESERQELGNLAQWHLPDGSPCASTDGDFKRVDTLKQVKQEGVSDSPTGLKLGIRKNRNGVWEVSKPEGTNTSSGNKLKGVFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTANGIEMDSLCLNSVDLAYEYTVHDTSAQVGGAEVIVLSDSEEDNDLLVSPPIAYKNNRNDATDGYSVQPPVMVDSYTGDPNLGGNSCLGLFPNDDDFGMSSLWSLPSGSQAGPGFQLFGSDADVSDALVHLQHGPVNCSSSLNGYALAPDTALGSGGILQDSSAGRLDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNELRDQANVANGVCTEEDWISLSLGGCAGGSNGDASTQNGLNSRHQIPTREVGTNTLDDTASLLLGMNDVRSDRPSRQRSDSPFSFPRQRRSVRPRLYLSIDSDSE* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00497 879 MobiDBLite consensus disorder prediction 541 565 - -
Lapu11g00497 879 FunFam E3 SUMO-protein ligase SIZ2 333 447 - -
Lapu11g00497 879 SMART PHD_3 114 166 IPR001965 -
Lapu11g00497 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 447 IPR013083 -
Lapu11g00497 879 SUPERFAMILY SAP domain 1 59 IPR036361 -
Lapu11g00497 879 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Lapu11g00497 879 Pfam SAP domain 12 42 IPR003034 -
Lapu11g00497 879 CDD SP-RING_Siz-like 360 409 IPR031141 -
Lapu11g00497 879 Pfam PHD-finger 114 166 IPR019787 -
Lapu11g00497 879 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Lapu11g00497 879 MobiDBLite consensus disorder prediction 840 879 - -
Lapu11g00497 879 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 645 - -
Lapu11g00497 879 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Lapu11g00497 879 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Lapu11g00497 879 MobiDBLite consensus disorder prediction 514 530 - -
Lapu11g00497 879 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Lapu11g00497 879 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Lapu11g00497 879 Gene3D SAP domain 3 58 IPR036361 -
Lapu11g00497 879 MobiDBLite consensus disorder prediction 513 532 - -
Lapu11g00497 879 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Lapu11g00497 879 SMART sap_9 11 45 IPR003034 -
Lapu11g00497 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00497 Lapu-Chr11 8193182 8205360 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu11g00497 PHD 3.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00497 - - gmx:100793735 1634.77