Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00493 ATGGAATTTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCTGTGAATGTGAGAAAGATGCTGGTGTTAGTTGTTGGTCCTCTTCCACTTCTTCATCTTGTAGTTCCTCTTCAGCTCGTGTATCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCCCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCCTTTCTCACCAATGGAGATTCCCTCTTATGATCTTCAGCCACAGATCTTTTGCAAGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACTCAGGTTACTTTGCTTCCTCAGGCCGAGTTGGAAGGGATGCATTCAGAGGGCAAGGAACTTGAGGAATTTGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTTTGTAAAACACTAACTGCCTCGGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCCTTGGATTATAAGCAGCAGAGGCCCTCACAGGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAGTTTCGTCACATTTACCGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGTGAACTGAGACTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCTGAATCAGTTATTGGTAGCCAGAACTGCTACCCCAAGGTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAATTTCACGTTTTCTACAGTCCAAGGGCAAGTCATGCAGACTTTGTTGTTCCATATAAAAAATATGCCAAAAGCATCAAGAATCCAGTGAGCATTGGGACAAGATTCAAAATGAGACTCGAAATGGATGAATCTCAAGAAAGAAGGTGTAATAGTGGCACGTTGATTGCAACTAGTGATTTGGATCCTTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCTTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACTGGTCTACAGGTTGCCTCACCTAGTCACCTCATCACTGCAGCACGAGGCAGTGGGTTGGTGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTGTGTCACTCTACTACGGATGTGAAACAGTAACCAAGCCACTAGGTTTTGAGATGAGCTCTCCGAGTCATCCAAATCTTGGATCAGCTGAAGTTAGAAAGGTTACCTCTTCTGAGCTTAGTAGTGTTCACCCTTTCAGTTATGCAGGCTTTGTGGAACCTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCTTTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAATGCCCAATCTGGGTTTCAACCTCCACCAGGCAACCAAGCCCAACTTTCAACCTACATTGTTTCCTTATGGGGACATTCACCAAGCTGGTCAAGCTAGCTTGTTTTGCTCAAAATCCACCACTTTCCCGAGAGAGAATGTCCCATTTAATAAACCATCCACTCAGTCAGGAATCATTGTAAATGAAGTTGGACGAACAGAACTCCCAAATGAGCATAAGCTGCAGGACAATCTTTCTGCTGCTGCTTCATTGGGGGTTCCTAATGACAGCAATGTTCAGGGAAAAGTAAATGCCTGCAAACTCTTCGGGTTTTCTTTGTCTGGGGAAACCACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGAGTGAACTAGAGAGACTGTTTGGCATGGAAGGCCTTCTGAAAGATCCTGACAAGGGATGGAGGATCCTCTACACTGATAGTGAGAATGACATAATGGTTGTGGGGGATGACCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAGGTGGAAAAGATGACAATTGGGATGATCAGTGATGATACTCATAGCTGTTTGGAAGAGGCACCAATCATTACGGAGGCTTCAAAGTCTTCTTCTGTGGGTCAGCCAGATTATTCTCCAACTGCAGTTAGAGTCTAA 2358 0.4512 MEFDLNHEVTEVEKNAFCECEKDAGVSCWSSSTSSSCSSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFSPMEIPSYDLQPQIFCKVVNVQLLANKENDEVYTQVTLLPQAELEGMHSEGKELEEFGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPKVLSSVANAISTKSKFHVFYSPRASHADFVVPYKKYAKSIKNPVSIGTRFKMRLEMDESQERRCNSGTLIATSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHLITAARGSGLVGFEESVRSPKVLQGQENAGFVSLYYGCETVTKPLGFEMSSPSHPNLGSAEVRKVTSSELSSVHPFSYAGFVEPNRFPRVLQGQEICPLKSLTGKVDLNLGAWGMPNLGFNLHQATKPNFQPTLFPYGDIHQAGQASLFCSKSTTFPRENVPFNKPSTQSGIIVNEVGRTELPNEHKLQDNLSAAASLGVPNDSNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTHSCLEEAPIITEASKSSSVGQPDYSPTAVRV* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00493 785 SMART B3_2 162 264 IPR003340 GO:0003677
Lapu11g00493 785 ProSiteProfiles PB1 domain profile. 657 741 IPR000270 GO:0005515
Lapu11g00493 785 SUPERFAMILY CAD & PB1 domains 660 736 - -
Lapu11g00493 785 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Lapu11g00493 785 SUPERFAMILY DNA-binding pseudobarrel domain 154 273 IPR015300 -
Lapu11g00493 785 Gene3D - 325 396 - -
Lapu11g00493 785 Pfam AUX/IAA family 648 741 IPR033389 -
Lapu11g00493 785 Gene3D - 160 264 IPR015300 -
Lapu11g00493 785 FunFam Auxin response factor 160 264 - -
Lapu11g00493 785 CDD B3_DNA 160 262 IPR003340 GO:0003677
Lapu11g00493 785 FunFam Auxin response factor 325 398 - -
Lapu11g00493 785 FunFam Auxin response factor 652 746 - -
Lapu11g00493 785 Pfam Auxin response factor 288 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu11g00493 785 Gene3D - 653 746 - -
Lapu11g00493 785 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Lapu11g00493 785 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 746 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00493 Lapu-Chr11 8146560 8152852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00493 44 785 B3 DNA Binding Superfamily AT5G60450 60.898 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu11g00493 AUX_IAA 2.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00493 - - gmx:100783513 1447.57