Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00489 ATGATGTCTGAAGAATCCTTATCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCCCCAAGCTCAAACCCTAATAATCCTAACCCTAGTTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTAGCTCTGTCACCTAAGTCTCTCATGGCCACCAACCGTTTCATATGTGAAATCTGCAACAAGGGCTTTCAGAGAGACCAGAATTTGCAGCTGCATAGACGTGGCCACAACCTTCCTTGGAAGTTGAAGCAGAGAACAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGACCCCTCTAGAGCCTTGGGAGACTTGACAGGCATAAAGAAGCACTATAGCCGAAAGCATGGAGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGTGACGCTTTGGCTGAAGAAAGTGTGAGGATAACAACAGTTCCAGCAGCTTTAAGCAACTTGAGAAACGATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTTTTTCCGGGTTTCACTCAGATCAATTCGGTGGTTCAGGAACATCAGAACCGTTGGTGAATTATGCTGAAGCAAATCATCATCATCAACAACAAAAGCTAAGGCTACCACTCTGGCTAGACCACCAGACCAATCCACAAGTACTTCACCACCACCTTATTAACTTCCCAACCAAACCAAGTGCTTTCACTTCTTCGGGGCCAAACACTGTGCCCGATATGGTGCAAACGATGGACATGTTTGGGTCACAGTTTGTGAATTACCGTTACCCAGAAGCGTCATTTGGAGGTGCCAACCTGTCCGTGCTGCCGCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGACTTGTCGCATAGCGAAAGCTCGAACTTGTACTTGAGTAGTGATCAGAACCCACCTCACTACATGTCAGCCACCACACTGCTGCAGAAAACTGTTCAAATGGGATCTACGAGGGTGAACGACAACACCTTTTGCTCCACGGGCAGCAATAGAAACAGCAACCACAACAATGTTGTCAACAACGCTGTTGTTGAGGTTCAGAAGCTGGACGAGTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGTGGTGGTGGGTATTTATTAAATGATGACTCAAACAACTCGTTTGCAGTCGTGAATGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGTGACAACAGCATCAATTATGGGAAAACAATTACACTCACTAAGCTCACACAACAAAAATCAACTTGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAATAACATTGAATCAATAAGGAGACCCTTTTTTCAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCATGAACCTGCAGAGCCAGTACGGTGGACACTATATCTAG 1599 0.4603 MMSEESLSVPPNTVRDSLVHVQPPSSNPNNPNPSSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRITTVPAALSNLRNDHHLTNAQASRIPQIFSGFHSDQFGGSGTSEPLVNYAEANHHHQQQKLRLPLWLDHQTNPQVLHHHLINFPTKPSAFTSSGPNTVPDMVQTMDMFGSQFVNYRYPEASFGGANLSVLPPHGLKQEQEENKGDLSHSESSNLYLSSDQNPPHYMSATTLLQKTVQMGSTRVNDNTFCSTGSNRNSNHNNVVNNAVVEVQKLDELVSVEGCTNLGGGGGYLLNDDSNNSFAVVNGTKGLEHMVMPVDEVTTASIMGKQLHSLSSHNKNQLGLTRDFLGVGDNNIESIRRPFFQQDLVEFNAMGSASAMNLQSQYGGHYI* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00489 532 FunFam protein indeterminate-domain 12-like 47 116 - -
Lapu11g00489 532 Gene3D Classic Zinc Finger 121 202 - -
Lapu11g00489 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Lapu11g00489 532 MobiDBLite consensus disorder prediction 1 52 - -
Lapu11g00489 532 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Lapu11g00489 532 MobiDBLite consensus disorder prediction 339 362 - -
Lapu11g00489 532 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Lapu11g00489 532 SMART c2h2final6 145 165 IPR013087 -
Lapu11g00489 532 SMART c2h2final6 110 140 IPR013087 -
Lapu11g00489 532 SMART c2h2final6 68 90 IPR013087 -
Lapu11g00489 532 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Lapu11g00489 532 Gene3D Classic Zinc Finger 47 120 - -
Lapu11g00489 532 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Lapu11g00489 532 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 506 IPR031140 -
Lapu11g00489 532 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00489 Lapu-Chr11 8085957 8089266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00489 38 215 IDZ Gene Family AT3G45260 85.393 4.33e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g00489 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00489 K25870 - gmx:100817691 780.4