Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu11g00489 | ATGATGTCTGAAGAATCCTTATCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCCCCAAGCTCAAACCCTAATAATCCTAACCCTAGTTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTAGCTCTGTCACCTAAGTCTCTCATGGCCACCAACCGTTTCATATGTGAAATCTGCAACAAGGGCTTTCAGAGAGACCAGAATTTGCAGCTGCATAGACGTGGCCACAACCTTCCTTGGAAGTTGAAGCAGAGAACAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGACCCCTCTAGAGCCTTGGGAGACTTGACAGGCATAAAGAAGCACTATAGCCGAAAGCATGGAGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGTGACGCTTTGGCTGAAGAAAGTGTGAGGATAACAACAGTTCCAGCAGCTTTAAGCAACTTGAGAAACGATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTTTTTCCGGGTTTCACTCAGATCAATTCGGTGGTTCAGGAACATCAGAACCGTTGGTGAATTATGCTGAAGCAAATCATCATCATCAACAACAAAAGCTAAGGCTACCACTCTGGCTAGACCACCAGACCAATCCACAAGTACTTCACCACCACCTTATTAACTTCCCAACCAAACCAAGTGCTTTCACTTCTTCGGGGCCAAACACTGTGCCCGATATGGTGCAAACGATGGACATGTTTGGGTCACAGTTTGTGAATTACCGTTACCCAGAAGCGTCATTTGGAGGTGCCAACCTGTCCGTGCTGCCGCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGACTTGTCGCATAGCGAAAGCTCGAACTTGTACTTGAGTAGTGATCAGAACCCACCTCACTACATGTCAGCCACCACACTGCTGCAGAAAACTGTTCAAATGGGATCTACGAGGGTGAACGACAACACCTTTTGCTCCACGGGCAGCAATAGAAACAGCAACCACAACAATGTTGTCAACAACGCTGTTGTTGAGGTTCAGAAGCTGGACGAGTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGTGGTGGTGGGTATTTATTAAATGATGACTCAAACAACTCGTTTGCAGTCGTGAATGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGTGACAACAGCATCAATTATGGGAAAACAATTACACTCACTAAGCTCACACAACAAAAATCAACTTGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAATAACATTGAATCAATAAGGAGACCCTTTTTTCAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCATGAACCTGCAGAGCCAGTACGGTGGACACTATATCTAG | 1599 | 0.4603 | MMSEESLSVPPNTVRDSLVHVQPPSSNPNNPNPSSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRITTVPAALSNLRNDHHLTNAQASRIPQIFSGFHSDQFGGSGTSEPLVNYAEANHHHQQQKLRLPLWLDHQTNPQVLHHHLINFPTKPSAFTSSGPNTVPDMVQTMDMFGSQFVNYRYPEASFGGANLSVLPPHGLKQEQEENKGDLSHSESSNLYLSSDQNPPHYMSATTLLQKTVQMGSTRVNDNTFCSTGSNRNSNHNNVVNNAVVEVQKLDELVSVEGCTNLGGGGGYLLNDDSNNSFAVVNGTKGLEHMVMPVDEVTTASIMGKQLHSLSSHNKNQLGLTRDFLGVGDNNIESIRRPFFQQDLVEFNAMGSASAMNLQSQYGGHYI* | 533 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu11g00489 | 532 | FunFam | protein indeterminate-domain 12-like | 47 | 116 | - | - | |
Lapu11g00489 | 532 | Gene3D | Classic Zinc Finger | 121 | 202 | - | - | |
Lapu11g00489 | 532 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 68 | 90 | IPR013087 | - | |
Lapu11g00489 | 532 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Lapu11g00489 | 532 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 123 | 202 | - | - | |
Lapu11g00489 | 532 | MobiDBLite | consensus disorder prediction | 339 | 362 | - | - | |
Lapu11g00489 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 67 | 165 | IPR036236 | - | |
Lapu11g00489 | 532 | SMART | c2h2final6 | 145 | 165 | IPR013087 | - | |
Lapu11g00489 | 532 | SMART | c2h2final6 | 110 | 140 | IPR013087 | - | |
Lapu11g00489 | 532 | SMART | c2h2final6 | 68 | 90 | IPR013087 | - | |
Lapu11g00489 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 70 | 90 | IPR013087 | - | |
Lapu11g00489 | 532 | Gene3D | Classic Zinc Finger | 47 | 120 | - | - | |
Lapu11g00489 | 532 | Pfam | Zinc-finger double-stranded RNA-binding | 68 | 90 | IPR022755 | - | |
Lapu11g00489 | 532 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 24 | 506 | IPR031140 | - | |
Lapu11g00489 | 532 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu11g00489 | Lapu-Chr11 | 8085957 | 8089266 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu11g00489 | 38 | 215 | IDZ Gene Family | AT3G45260 | 85.393 | 4.33e-115 | 346 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lapu11g00489 | zf-C2H2_jaz | 7.9e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu11g00489 | K25870 | - | gmx:100817691 | 780.4 |