Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00463 ATGTTCGAAAAGACTCTTTCTTTTGCCTGTGTGATGGGGTGCTGTAGTTGTTTTGGGTTCATCAGAACACCTAACCGTCAAAGACAAAGATCTAAGCCTGCCATTAACAATAATCTCTCGGAGCCTCTGTTGGATGTTGATGACGACATTGAAGATGAAGAGGGCGAGCATTCTTATAACGATGAGGTTAGTAACACTAGTGGAGATGATGGCGAGGAAGAAACTCGTCCCAAGCGATCAGAAGAAATTTTGAACTTGAGAGTAGAGAATGGCATGGTTTGTAGGCAGTTTCCTGTTAAAGATACTCACAAAGTTGTTCGCAAGGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTACGGAAAAGTGGCTCTTTATCGAAGCTCTATCGATGGAAAGCATTATGCAATCAAGGCCTTCCATAAGTCTCATTTACTGAAGCTTCGAGTTGCACCGTCAGAAACTGCCATGACTGATGTACTACGAGAGGTTCTCATTATGAAAATGCTGGAACATCCTAACATAGTCAATCTAATTGAGGTGATTGATGACCCAGAGTCGGATAACTTCTACATGGTACTTGAATACGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCCCGCATGTGGCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGTGATATTGTTTCTGGATTAACATATCTTCATGCTCATAACATAGTACATGGGGATATTAAACCAGATAATTTGTTGATTACTCATCATGGTACTGTGAAGATAGGGGATTTCAGTGTCAGCCAGGCTGTTGAGGATAATAAGGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAGTGTATTTTAGGTCTGACCTATGGTGGTAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCGTTTCTTGGAGACACACTTCAAGATACATACGACAAAATAGTCAATAATCCTTTGGTACTCCCCAATGATTTGAATCCGCCATTGAAGAACTTGATAGAAGGCTTACTTTCCAAAGACCCAAGACTAAGAATGACTTTGGGTGATGTTGCGGAAGATAGATGGATTATTGGAGATGATGGGCCGATTCCCGAGTACCTTTGTTGGTGCAAAAGGAAGAGCTTGGGGATTGAAGACCATGACGAGAGCAATACCAACTAA 1236 0.4223 MFEKTLSFACVMGCCSCFGFIRTPNRQRQRSKPAINNNLSEPLLDVDDDIEDEEGEHSYNDEVSNTSGDDGEEETRPKRSEEILNLRVENGMVCRQFPVKDTHKVVRKEDENGNKMINEYIREYKIGSGSYGKVALYRSSIDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDNFYMVLEYVEGKWVCEGSGPACGLGEETARRYLRDIVSGLTYLHAHNIVHGDIKPDNLLITHHGTVKIGDFSVSQAVEDNKDELRRSPGTPVFTAPECILGLTYGGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPNDLNPPLKNLIEGLLSKDPRLRMTLGDVAEDRWIIGDDGPIPEYLCWCKRKSLGIEDHDESNTN* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00463 411 FunFam Serine/threonine-protein kinase GRIK2 110 411 - -
Lapu11g00463 411 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Lapu11g00463 411 ProSiteProfiles Protein kinase domain profile. 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00463 411 SUPERFAMILY Protein kinase-like (PK-like) 112 392 IPR011009 -
Lapu11g00463 411 SMART serkin_6 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00463 411 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 72 383 - -
Lapu11g00463 411 MobiDBLite consensus disorder prediction 55 78 - -
Lapu11g00463 411 CDD STKc_LKB1_CaMKK 126 381 - -
Lapu11g00463 411 FunFam Serine/threonine-protein kinase Ssp1 114 216 - -
Lapu11g00463 411 Gene3D Phosphorylase Kinase; domain 1 114 216 - -
Lapu11g00463 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Lapu11g00463 411 Pfam Protein kinase domain 122 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00463 411 Gene3D Transferase(Phosphotransferase) domain 1 219 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00463 Lapu-Chr11 7954235 7961121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00463 126 388 CBL-interacting serine-threonine protein kinases AT5G35410 33.840 1.79e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Lapu11g00463 Pkinase 1.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00463 K00908 - gmx:100789178 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00463 11 7954235 7961121 Lapu11g00463 11 7954235 7961121 ECH