Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00460 ATGGCGGAACCTGTCGCCAACACCCAATACTCTCCCTCTAAAACCCTAGACTCAATCAACAGTCATGATTCTACTTTGGAACCGAATCAAACACAAGACGCTCAACTTAATCAAGAAAACGACGACGTCGTTCTGACCGGGAAACGGAATAGGGACGACGACAACGACGGCGAGGAGCGTTCGCTTCATCCTCTGTGGAAGACCAGTCTCTGCTCCTTCTATCGCAGCCACAACAACTCATGCAACCACGGCGACACGTGCCGCTACGCGCACGGCGAGGAGGAGCTCCGCCCTCGCCCCGATAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAGGCATTGAAGACCGAGACGGGTGAAAGGTGCGCCGTCTCGGAGGACGTGATGATGACGGAGGCTGTTGTCGACGGCGACGAATGTGGGTCCAATCACGCGCTTAGCAAATGCTTGGTGCATTTGCCGCGTAAGTGGAGTTCGGAGAATTTGAGGAATTTTCTCAACGAACAGGCAGGCTTGTTTGCTTATTTTGGTATAGCTTTTAAGTATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAATTGAAGAGTTCGTCAAAGGATTTAGAAGGAAAAACAATTGGCAACAAAAAGGTGAAGGTCGCTGATGTCATTCCTCGGTCATTTGAAAAGAAAAGTAACTCCAGTGTTGCTTCCCATCAAGAATTGGATGAAGGGGTTGATGTTCCATCGAATGGAGCTTTGGATGCTGAAACAAATAATGATAAGTTGGCTGTTGATGCTTCTGTGTCTAAGACAAGAAATTTGCGTGATGTAGTGACTCCTCTGGCTCACATTCCCTATGCTGATCAGTTGGAGCAGAAAAAAACCTCTCTCATGCAGATTCTCAAAAAGCTTACTAGAAATGCGCGTAAAGCTTGTCCAAATGGTGTTTCACTTCCTGAGTGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCGTGCAAACTAGAAGGTATTATTGCATCTCCAATTGTATATGGATACCGTAACAAGTGTGAATTCTCTGTTGGATATTCTCTGGAAGGCAATGTGACTGTAGGTTTCATGCTTGGAAACTTCAGGGAAGGTGTAACAGCAGTCGAGGAAGCAGTTGAGTGCCCAAATGTTTCAACGATTGCTTGCAAATATGCTACAATATTTCAGGAATTTCTGCAGCACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTCCGAGAAGGGAGAGCAAATGGGAATACTGATCATGCTGAAACTTTTGGTGGCATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAACTTTGATGATGCATTGGTAGCTTCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTGCTGGAGCTACTTCGCATTGTCCAACATTACCCCTCACAGCTCTGTTTGTTCAGGATCACCAAGGAATCTCCAATGTGGCACCCGCTGATGCACCACTGCATTTGCTTCCACTTCCTAAAGAAAGTGGGGATCCTGAGATGGATGAAAACAATAATGCCATGGATACAAGAATCCATGATTATATCAACAATCTCCAGTTCTCTATATCTCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTATACTCTCTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACACTACTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCAGTATCTGACGCCCATAGGAATGCTGAGATTAATGGAATAAAAAACATTAGATTTATATGTTCAAAGGCAGAGGACGTTATGGGATCTCTGTTAAGGGAATACCTCAATGTGACTAAGGAACAAAATGATTGTAATACCTCTAGAAGTGGCAATGACATTCCTGAAGATAGTGCCTGCCCAGAGACTGAAAATGGAGAAATGGCATCTCATTGTCCAGAAAATAACAATGCAGAATTTGGAAGTGAGGTTCAGAAGGTTAGCACCTCTGAACAAGTTGATGGGATATCTGAACAGGCAGGGAACGTGACAGGATCTCAGTTAAGGGATGACGTAAATGTGCCTAAGGAACAAAGTGATGATCCAAATGTGTGTGGAAGTGGCAATGACATTCCTGGGGATAGTACCTGCCCAGGGCGTGAAATCAGTGAAATGACATGTCGTTCAGAAAATAACAATGCAGAAGTTCGAAGTGAGGTTCAGAAGGGTAATTCTTCTGAAAAGGGGAACACTTCCATGCAACAGTTCAAAAATGTTGTTGCCATTGTTGATCCTCCTCGTGCTGGACTTCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCACGCTTGCGGAGGCTTGTCTACATATCCTGCAATCCTGAAAGTCTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCTCCCATAAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCACGTCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCAACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2691 0.4448 MAEPVANTQYSPSKTLDSINSHDSTLEPNQTQDAQLNQENDDVVLTGKRNRDDDNDGEERSLHPLWKTSLCSFYRSHNNSCNHGDTCRYAHGEEELRPRPDNTWDPTSERAKKALKTETGERCAVSEDVMMTEAVVDGDECGSNHALSKCLVHLPRKWSSENLRNFLNEQAGLFAYFGIAFKYAKKKKGMMIGFVTFEDEEQLKSSSKDLEGKTIGNKKVKVADVIPRSFEKKSNSSVASHQELDEGVDVPSNGALDAETNNDKLAVDASVSKTRNLRDVVTPLAHIPYADQLEQKKTSLMQILKKLTRNARKACPNGVSLPEWILKSREIGGLPCKLEGIIASPIVYGYRNKCEFSVGYSLEGNVTVGFMLGNFREGVTAVEEAVECPNVSTIACKYATIFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRANGNTDHAETFGGIAEVMLIVQVSTANFDDALVASEFKRLAQAFVAGATSHCPTLPLTALFVQDHQGISNVAPADAPLHLLPLPKESGDPEMDENNNAMDTRIHDYINNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNIRFICSKAEDVMGSLLREYLNVTKEQNDCNTSRSGNDIPEDSACPETENGEMASHCPENNNAEFGSEVQKVSTSEQVDGISEQAGNVTGSQLRDDVNVPKEQSDDPNVCGSGNDIPGDSTCPGREISEMTCRSENNNAEVRSEVQKGNSSEKGNTSMQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPIKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTQHCELVMLLER* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00460 896 Coils Coil 290 310 - -
Lapu11g00460 896 Gene3D - 57 99 - -
Lapu11g00460 896 Pfam Methyltransferase domain 578 636 IPR025714 -
Lapu11g00460 896 SUPERFAMILY RNA-binding domain, RBD 153 233 IPR035979 GO:0003676
Lapu11g00460 896 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 283 896 IPR029063 -
Lapu11g00460 896 SUPERFAMILY CCCH zinc finger 63 98 IPR036855 GO:0046872
Lapu11g00460 896 Gene3D Vaccinia Virus protein VP39 748 896 IPR029063 -
Lapu11g00460 896 CDD AdoMet_MTases 580 634 - -
Lapu11g00460 896 ProSitePatterns RNA methyltransferase trmA family signature 1. 791 823 IPR030390 -
Lapu11g00460 896 Pfam tRNA (Uracil-5-)-methyltransferase 780 832 IPR010280 GO:0006396|GO:0008173
Lapu11g00460 896 MobiDBLite consensus disorder prediction 1 43 - -
Lapu11g00460 896 MobiDBLite consensus disorder prediction 44 61 - -
Lapu11g00460 896 Gene3D - 150 224 IPR012677 -
Lapu11g00460 896 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 227 IPR000504 GO:0003723
Lapu11g00460 896 MobiDBLite consensus disorder prediction 676 719 - -
Lapu11g00460 896 ProSiteProfiles Zinc finger C3H1-type profile. 65 94 IPR000571 GO:0046872
Lapu11g00460 896 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 280 896 IPR010280 GO:0006396|GO:0008173
Lapu11g00460 896 Gene3D Vaccinia Virus protein VP39 551 651 IPR029063 -
Lapu11g00460 896 Gene3D - 351 550 - -
Lapu11g00460 896 MobiDBLite consensus disorder prediction 1 61 - -
Lapu11g00460 896 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 66 93 IPR000571 GO:0046872
Lapu11g00460 896 SMART c3hfinal6 65 93 IPR000571 GO:0046872
Lapu11g00460 896 MobiDBLite consensus disorder prediction 233 257 - -
Lapu11g00460 896 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 83 896 IPR045850 -
Lapu11g00460 896 MobiDBLite consensus disorder prediction 96 118 - -
Lapu11g00460 896 MobiDBLite consensus disorder prediction 650 748 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu11g00460 tRNA_U5-meth_tr 9e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00460 K15332 - gmx:100816103 1465.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00460 11 7930806 7936907 Lapu11g00460 11 7930806 7936907 ECH