Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00459 ATGCGTACAGAGGAAAAGCCTGTGAATGAGGAACATGATGCAGGTTCTTGCAGACGAACAGTTTCTCTTCCTGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCTCGCATGTTCCTCCTCGGAAGCGGCAGAATCTTCTCCTAGAAATACCATCAAGAACAGAAGATAGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAGTTCCAATCCCACTCCTACACCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCTACACATAACTCTCCTGGGCCTTCAACATCAAGAGGAAAATCAACCATAAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGAACACCAGCAGATGTTGAAAAGGCAAATACTGCAGCTCCAGAAGTTTCCTCTTCAGGCATTGGAGAAAAGCCTTCAATTGCAAGATCATTGTCTCTAACTAAGATATTTACTCCTAGGATTAAGAGAACGTCGTCATTACCACTAGATGAGATTAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCTCAGCGGAATATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGATAAAAGCTTAAGGAGGATGGATTCATTTTTTCGTATTGTTCCTTCCACTCCTCGAGTAAGGGAAGGAGATCAATTGTTAGACACTTCAACAAATGATACTGAAAATGAAGTTGCTAATGGTGAAGATATAGCCGAAGAAGAGGCTGTATGTAGAATCTGTCTAGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCCATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGATGTTCGGAACCTACCTGTCACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGTGCAAATAGGTCTCATCTGGAAGATGCAAATGGATACAGGGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTTGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACCGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGTGAAAAGCAGGTTCATCTGGATTTATGCTTCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCGCATATTTTTTACTCTGTGGTTCGTGTGCAAGCTGTTTTGTCTATCCTTCTAGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTATAGATGGAGGAGAAGATTGCAAGCTTTATCAGAGCAGCGACAAGGCCCTCAGTTAATGCCACAAACAGGACAAAATCCACGGTCTTCAAACACTCCTCATTCAGATTCAGGTTCAGGTCCTTCCAACCACAGTCAACCTGTGGTGCAAAATGAACAAAACTCAAATCAGAGTTGA 1548 0.427 MRTEEKPVNEEHDAGSCRRTVSLPVQKVDDPMGITEETSHVPPRKRQNLLLEIPSRTEDSSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTHNSPGPSTSRGKSTIRSLLPKLSFRYRTPADVEKANTAAPEVSSSGIGEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKKEAQRNIARSLSVPANNKDKSLRRMDSFFRIVPSTPRVREGDQLLDTSTNDTENEVANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEDVRNLPVTLLRIQSVRNRNNGANRSHLEDANGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVRVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRLQALSEQRQGPQLMPQTGQNPRSSNTPHSDSGSGPSNHSQPVVQNEQNSNQS* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00459 515 MobiDBLite consensus disorder prediction 79 111 - -
Lapu11g00459 515 CDD RING_CH-C4HC3_MARCH 263 311 - -
Lapu11g00459 515 MobiDBLite consensus disorder prediction 1 111 - -
Lapu11g00459 515 SUPERFAMILY RING/U-box 259 313 - -
Lapu11g00459 515 MobiDBLite consensus disorder prediction 1 17 - -
Lapu11g00459 515 MobiDBLite consensus disorder prediction 170 196 - -
Lapu11g00459 515 MobiDBLite consensus disorder prediction 53 71 - -
Lapu11g00459 515 PANTHER OS02G0165000 PROTEIN 23 475 - -
Lapu11g00459 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
Lapu11g00459 515 SMART ringv_2 262 311 IPR011016 GO:0008270
Lapu11g00459 515 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Lapu11g00459 515 MobiDBLite consensus disorder prediction 469 515 - -
Lapu11g00459 515 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Lapu11g00459 515 MobiDBLite consensus disorder prediction 171 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00459 Lapu-Chr11 7915882 7922113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00459 221 366 C3H Transcription Factor Family AT2G37950 31.613 1.54e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00459 - - gmx:100815566 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00458 5 3922936 3927777 Lapu11g00459 11 7915882 7922113 PCT