Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00454 ATGGCTAAAGATGTTGAGGTTCAAGAGCAAGGAGAATACTCTGCCAAAGACTATCATGACCCTCCTCCAGCACCCTTGTTTGACCCCGAAGAGCTCACACAGTGGTCCTTCTATAGAGCCCTTATCGCTGAGTTCATAGCAACCCTTCTCTTCCTCTATGTCACTGTGCTAACCATTATAGGCTACAAAAGACAGACTGATGCCAAAGTTGGTGGCACCGAATGTGACGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGTATTTCAGGAGGGCACATAAACCCGGCTGTGACATTCGGGCTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATGGTAGCACAGTGTGCTGGTGCTATCTGTGGCACTGGACTGGCCAAGGGGTTCCAAAAGGCATACTACAACAGGTATGGAGGTGGTGCTAACTCTGTTGCTGATGGTTACAACAAGGGTACTGCTTTGGGTGCTGAGATTATTGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCTGTACTAGCACCACTCCCCATTGGCTTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCAGTCACTGGCACTGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTACAATGAAGAAAAAATCTGGGATGATCAGTGGATTTTCTGGGTTGGACCAATTATTGGAGCAGCAGTGGCTGCATTCTACCACCAATTCATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCATTCAGGAGCAATGCTTAA 858 0.4883 MAKDVEVQEQGEYSAKDYHDPPPAPLFDPEELTQWSFYRALIAEFIATLLFLYVTVLTIIGYKRQTDAKVGGTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCAGAICGTGLAKGFQKAYYNRYGGGANSVADGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNEEKIWDDQWIFWVGPIIGAAVAAFYHQFILRAAAIKALGSFRSNA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00454 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00454 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00454 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Lapu11g00454 285 FunFam Probable aquaporin PIP1-2 24 285 - -
Lapu11g00454 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Lapu11g00454 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00454 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00454 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00454 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00454 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00454 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00454 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lapu11g00454 285 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu11g00454 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 274 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00454 Lapu-Chr11 7880753 7883330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00454 1 283 Major Intrinsic Protein MIP AT5G60660 82.332 1.57e-176 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00454 K09872 - gmx:100811119 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00463 5 3975749 3976941 Lapu11g00454 11 7880753 7883330 PCT