Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00445 ATGAAGGAGGGTGAGAAGGTATTGGATCCGCAGCTATGGCACGCCTGTGCAGGTGGCATGGTTCAGATGCCGCAAGTAAACTCCAAAGTCTTCTACTTCCCACAGGGTCACGCCGAACACGCTCAAACCAACATTGATCTCAGGGTTCCGCCGCACATTCTCTGCAACGTGGAAGCCGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTCTTCGCCAAACTGATTCTGGTTCCTCTCAGGAACTCGGAACTCGGTCCCGACTCGGAGGGGTGCGCTGACGTGGCGGAGGCTTCGGAGAAACCCGCGTCTTTCGCGAAGACTCTGACGCAGTCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCGCGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCAGCGGAGCCGCCGGTGCAGACGGTGGTAGCGAAGGACGTGCAGGGGGAGACATGGAGGTTCCGGCACATATACCGAGGGACGCCACGTCGGCACTTGCTGACGACAGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGGGATTCTGTGGTGTTTCTGAGGTCTGAGAATGGAGAGTTGTGTGTTGGGATTCGGAGGGCAAAGAAGGGAATTGGGTGTGAGGTGTGGAACTCTGCTTCTGGTTCAGGCTCTGGAAGTGGAGGTGGAAGTGGGAATTGTGGTATTGGACCTTATGGGCCTTTCTCTTTTTTCCTCAGAGAGGAGAGTAAGAGTTTAAGGAATGGTGGTGGTGGTGGTGGCAATTTGAGTGGAAGGGCCAAAGTGAGGCCTGAGGCTGTTGTTGAAGCTGTCACACTGGCTGCTGGTAATAAACCTTTTGAGGTTGTTTATTATCCAAGAGCTAGCACTCCTGAGTTTTGCATTAAGGCTTCTACTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCCTCTAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATCCGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGCTGGTTGAATTGGTATCAAACTTGCCAGTCATCAATTTCACACCTTTCTCTCCGCCAAGAAAGAAGCTGCGGTTTCCGCAGCACCCGGAGTTCGCCCTTGATGTTCAATTTCCAATACCAACGTTTTCAGGCAACCAGCTCGGGCCTAACAACCCCTTGTGTGGTTTTTCGGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCAATATCAGATTTCCACCTTAACAATAAACTGCAGTTGGGGTTGCTTCCATCTAATATCCAGCAACTTGGAGTGTATAGTGGGATTTCAAATGCTAACACGACCAACCATGATAAGAGCAAAGAAGGCTTATCACACTTGCTGACCATCGGGAAATCTAGCAAGAGTTTGGAGAAATCTGACGATGTTAAGAAACATCAGTTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAGATGTGTTGTCTCGTGGGAAAAAATCACCAGATGATGTTAAGGACAAAGAGAAGTGCGTCTTGGATGACTCAAAATCTTCACTCTCACGGCAGTTTTCATCAGGGAAAGCTTCTGCTGCTGAGTTCTCTTGGCAACTTGGCTTGGATACTCGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACCCTAGACCTATCACGGCTTGGTTCTTATGAAGAACTGTATAGGAGACTTTCCTATATGTTTGGGGTTGAAAGATCTGAGATTCTGAATTATGTGTTCTACTATGATGCAACAGGTGCTGTTAAGCAAACTGGAGAAGAACCTTTCAGTGACTTCATGAAGACAGCGAAAAGATTGACAATTCTGACGGATTCAGGCAGCAAAAATGTTAAAAGGGCCTTTATTACAGGAACTCGGAATGGTGAACATGGACTTGATGCATCAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA 2088 0.488 MKEGEKVLDPQLWHACAGGMVQMPQVNSKVFYFPQGHAEHAQTNIDLRVPPHILCNVEAVKFMADPETDEVFAKLILVPLRNSELGPDSEGCADVAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGCEVWNSASGSGSGSGGGSGNCGIGPYGPFSFFLREESKSLRNGGGGGGNLSGRAKVRPEAVVEAVTLAAGNKPFEVVYYPRASTPEFCIKASTVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQHPEFALDVQFPIPTFSGNQLGPNNPLCGFSDNAPAGIQGARHAQIGTSISDFHLNNKLQLGLLPSNIQQLGVYSGISNANTTNHDKSKEGLSHLLTIGKSSKSLEKSDDVKKHQFLLFGQPILTEQQISRDVLSRGKKSPDDVKDKEKCVLDDSKSSLSRQFSSGKASAAEFSWQLGLDTRHCKVFLESEDVGRTLDLSRLGSYEELYRRLSYMFGVERSEILNYVFYYDATGAVKQTGEEPFSDFMKTAKRLTILTDSGSKNVKRAFITGTRNGEHGLDASNKTGPLSIFA* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00445 695 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
Lapu11g00445 695 Gene3D - 103 207 IPR015300 -
Lapu11g00445 695 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu11g00445 695 FunFam Auxin response factor 313 386 - -
Lapu11g00445 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 665 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu11g00445 695 CDD B3_DNA 104 205 IPR003340 GO:0003677
Lapu11g00445 695 ProSiteProfiles PB1 domain profile. 583 663 IPR000270 GO:0005515
Lapu11g00445 695 Gene3D - 581 668 - -
Lapu11g00445 695 Gene3D - 313 385 - -
Lapu11g00445 695 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Lapu11g00445 695 SUPERFAMILY DNA-binding pseudobarrel domain 100 206 IPR015300 -
Lapu11g00445 695 SMART B3_2 105 207 IPR003340 GO:0003677
Lapu11g00445 695 FunFam Auxin response factor 103 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00445 Lapu-Chr11 7775302 7779144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00445 1 667 B3 DNA Binding Superfamily AT4G30080 57.143 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu11g00445 B3 1.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00445 - - gmx:100814686 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00468 5 4039116 4043391 Lapu11g00445 11 7775302 7779144 PCT