Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00444 ATGAAGGACTTGTTGTTTTTTGACAAGAATTTTAATGGTTTGTGGGACGATATTCTTGATGATGTCATGGACATCGAGCTTTTCGATTTCCCCCATGAAGATGTGGAAACTGATGATAGTGTGGAACAAGATTGGGATGCTCAGTTCAAATTCCTTGAAGAGCCTTCACTAGGAATTTTTCCTGTACAATCGTCTCAGCTCTGTACTCATACTCAAAATGAGAACGTGAAAGTCGACACGAGTTTCTCTGCTTCTCCAGCGAAGACTGCAAGACCCACATATAGCAAAACTATTCATATCCAGAAAGTCTCTTTCAATCGAAAAGATTTGCACCAATTCCAAACCAACAGCCCAGTTTCTGTCTTTGAGAGCAGTAATAGTTCTCCCTTGGTTTATGTCATCCCAACAAAGCGTCCCCGAAGCAAACGCAGGCCTCTCTCAAACATCAGCCTGTTATACTCCATTCCCTTCATCTTTACTTCACCAACTTTTCAAAAATATCAAAGGATAGCTGTCTCCAAATCAGATTTAGAAACACGGCCAGTTGGGAAATTGTCAAGCATGGTAAAAAAGCAGAGGAAAATGAATATTCCCCTGCTAGCTAACAAAATTGAGATGAAGAGATCCTCGTCAGAGGAATCAGTTGCACTGGGAAAATGCTTGCATTGTGCGGTGACAAAGACCCCACAATGGAGAGAGGGACCAATGGGTCCAAAGACCTTATGCAACGCTTGTGGAGTTCGATACCGGTCTGGCAGGCTCTTTGCTGAATACCGGCCAGCAGCTAGCCCCACTTTTGTGGCATCATTACACTCTAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCCACTCAGGTGACAGTTAGATAA 876 0.4304 MKDLLFFDKNFNGLWDDILDDVMDIELFDFPHEDVETDDSVEQDWDAQFKFLEEPSLGIFPVQSSQLCTHTQNENVKVDTSFSASPAKTARPTYSKTIHIQKVSFNRKDLHQFQTNSPVSVFESSNSSPLVYVIPTKRPRSKRRPLSNISLLYSIPFIFTSPTFQKYQRIAVSKSDLETRPVGKLSSMVKKQRKMNIPLLANKIEMKRSSSEESVALGKCLHCAVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVASLHSNSHKKVLEIRNRATQVTVR* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00444 291 Gene3D - 218 264 IPR013088 GO:0006355|GO:0008270
Lapu11g00444 291 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Lapu11g00444 291 ProSiteProfiles GATA-type zinc finger domain profile. 219 250 IPR000679 GO:0006355|GO:0043565
Lapu11g00444 291 FunFam GATA transcription factor 210 291 - -
Lapu11g00444 291 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 276 - -
Lapu11g00444 291 CDD ZnF_GATA 219 266 IPR000679 GO:0006355|GO:0043565
Lapu11g00444 291 PANTHER GATA TRANSCRIPTION FACTOR 36 285 - -
Lapu11g00444 291 SMART GATA_3 214 264 IPR000679 GO:0006355|GO:0043565
Lapu11g00444 291 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00444 Lapu-Chr11 7753223 7761661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00444 8 284 C2C2-Gata Transcription Factor Family AT1G08010 37.024 2.45e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu11g00444 GATA 6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00444 - - gmx:100815208 408.683