Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00433 ATGAGCAGCTTAAGGCCTGAATTTCATGTTGCCCAACAACTTCGGCGCGACAAATTGAGGATCCAAAACAGTTCCCAACACTTGCAAGAGTTCCCTAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAATGGTAACTTGCTTGACGAGGCCCTTTATTCATCGGATATGTTAACTTTTTCCACTGCTTCGAATCCTTTATCCACTCCTAGAAACCCGTTAGAGTGTCAAGAGCTTATGATGGCTCAGTACGGTTCCACTTCGTTTCCTCATTCGTCGTCCCCTAAAGGCCAACAATGTGAACCACGCAACATGTGTGCTAATTGGATGGTGAATTATAACGAAAGCAACCCCAACACCAACAATAACACCTTCTTCTCTTCTGAGCTCAATAACAATGCTTCTGGTGAAATGACCAATAGAGAAATTCAGAAGCAGTTAGGTGAAATGCATTACCCTCCTTCTTCGTCTTCTTCGCCTCCTCTTTACCATAATACTTTGCAGGACATGGCGTATGACGTTTGGGGAGGGAACCATGGTGAGCCTGTGCTTCATTATCAAGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAATAGTAGCCCAATAGGTTTCAAAAAGAATGATGAACAAGACATAAATCCTCATCAGGGTTTATCATTGTCACTTTCATCAAACTCACAATCCAAGCCTTGTTTCGAAGAAGGGTCTGCATCAGATGACGCTACTCAATATTCAAAGTCAGTGAAGTCCTCTATGAAGCTGAACGTGCTTTCAAACAACACTGTTTATCGAAATGTTGGCCCCCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGGTTCTTGAAGCCGTGCCAACAGCTGTTAGATGAGTGGTGCTGTCAATATGGCTCAAAGACTGCAAAAGGAGAGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTACTGCTGCTGCTGGTGATGCTCTTAATGTTGATGAAAGTAGGGGTGCTGCAAAAGGTGGTAGTAATTTGGGTGCTTCATCCTCTGTGTTATATAGTTCAAATGAAAATGATAATACTAATAGCGCCGATGGCGGAGCCGCGAGTAGCTTCTTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCATTCGAGTCTGTAGCTGGTCTTAGTTCGGCTACTCCTTACGTCTCCTTGGCTCTCAAGTCAGTATCGAAACACTTCAGGTGCTTAAAAATTGCTATCTCAGATCAATTGAAGCTTGCATGTGAAGTCTTGGGAGAGGACTTTTCGATGCCAACCACAAGTACTAGTAGTAAATTTGACAATAATATGGCAAGGCTAAGATGCATAGATCAAAGTTTTCAGAAAAACAAATCTGTGGGGGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGCTTACCAGAGCGATCAGTGGCAATTCTTAAAGCTTGGCTATTTGAGCATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCAAGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAACAGAGATCCACCAAGCCTCTAGTAAAAATGACCAGGTAGGTTCTGCATCTGAAGCTAGCAACAAGCCCAAATCAGATCACCAACCTGTGAGCAGGTTTGGCACGCATGTATCATCACATGCAATCCCTGAGAAGCAATTTCAGTGTTTGGAGATGGGGTCATCATCCTCAGCAGGCAATGAGGAACACATTGGAATGGATGAAGACCAATGGAATCAAGAAAAGAGGTCAAAACTGGAATGCCAGATTGCTACCACACCAAACATGGATGGGACAGTGATGGGGTTTATGCCCTACAGAAGAGGTGGACTAGAGGTTGGTGGTCTAGGATCTGTGTCACTCACTTTGGGTCTGAGGCATAGTGTTGAAGGTGTACAACAGCAACAACTGCAGCAAGAGGAGGAGCTTAGGCGTCAGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2220 0.4455 MSSLRPEFHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNLLDEALYSSDMLTFSTASNPLSTPRNPLECQELMMAQYGSTSFPHSSSPKGQQCEPRNMCANWMVNYNESNPNTNNNTFFSSELNNNASGEMTNREIQKQLGEMHYPPSSSSSPPLYHNTLQDMAYDVWGGNHGEPVLHYQANNELRFGGANLWTNSSPIGFKKNDEQDINPHQGLSLSLSSNSQSKPCFEEGSASDDATQYSKSVKSSMKLNVLSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKTAKGEGCDVPEWVSRDVSTAAAGDALNVDESRGAAKGGSNLGASSSVLYSSNENDNTNSADGGAASSFFSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKIAISDQLKLACEVLGEDFSMPTTSTSSKFDNNMARLRCIDQSFQKNKSVGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEIHQASSKNDQVGSASEASNKPKSDHQPVSRFGTHVSSHAIPEKQFQCLEMGSSSSAGNEEHIGMDEDQWNQEKRSKLECQIATTPNMDGTVMGFMPYRRGGLEVGGLGSVSLTLGLRHSVEGVQQQQLQQEEELRRQFGGHMIHDFVG* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00433 739 SMART prehox3 289 458 IPR006563 -
Lapu11g00433 739 Pfam Associated with HOX 294 457 IPR006563 -
Lapu11g00433 739 Gene3D - 519 581 - -
Lapu11g00433 739 MobiDBLite consensus disorder prediction 589 621 - -
Lapu11g00433 739 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 165 604 - -
Lapu11g00433 739 MobiDBLite consensus disorder prediction 590 621 - -
Lapu11g00433 739 MobiDBLite consensus disorder prediction 222 254 - -
Lapu11g00433 739 SUPERFAMILY Homeodomain-like 518 582 IPR009057 -
Lapu11g00433 739 CDD homeodomain 516 577 IPR001356 GO:0003677
Lapu11g00433 739 SMART HOX_1 516 580 IPR001356 GO:0003677
Lapu11g00433 739 FunFam BEL1-like homeodomain protein 9 519 581 - -
Lapu11g00433 739 ProSiteProfiles 'Homeobox' domain profile. 513 576 IPR001356 GO:0003677
Lapu11g00433 739 MobiDBLite consensus disorder prediction 229 254 - -
Lapu11g00433 739 Pfam Homeobox KN domain 533 572 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00433 Lapu-Chr11 7601836 7607621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00433 388 710 Homeobox Transcription Factor Family AT4G34610 42.769 1.16e-66 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu11g00433 POX 1.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00433 - - vum:124831694 1306.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00481 5 4228291 4235473 Lapu11g00433 11 7601836 7607621 PCT