Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00431 ATGGCTTCTAAGACCCCAGTTCCTCTTAAACCCACCAACTCAAAGCTACCACCTCTAAGGGGAAAGAAAGATCGCCACACCAAGGTGAATGGCAGAGAACGACGTGTTCTTCTGCCACCTTTATGTGCTGCTCGCATCTTCCAACTCACTCGCGAGCTAGGTTACAAGACTCATGGAGAAACCATAGGGTGGCTTCTACGCCAGGCTGAACCCTCCATTATTTCTGCCACCGGCACTGGGATATCACCTTCCATGGTTGATGTAACATCATCGTCACCATCCTCATCCTCACCATCGTCACTACCGATACTTCCACTACCTTCTGACGACAACAACGTTGTTGGTCAGCATGCAAATTCGGTAGATGTGTCAACAGACAACGAGATCAATTCAAAAGAGACGTTTCTGCCATTGGATTTTGATATGTTTGCAAACTTCAATGTGGAATTTTCTGCTACTGAGATCGAAATGCTCCAATCATTGATGACGAGGGACGCTGATTGGAATGGGGCCTTTAATTTCACCAAAGATCTTACCTTCTTGACCATTTGTGCCCAACAATTGAAAGGAGATATTACACAACGCATGTGCACAGAAGCGGAAATACTAGCTTATGGCCAAAGTTTTGTTGGTGGGAAGTCAGGAACCAGATCCTTCTTGAAGCCCAACATAAATTGTAATTTGAGCTCATGGGTTAATGGTTGTGAACCCGGATGGGGTTGTAAAGCTAATCAGAAAGTAGACATTGACAGCACCAAGAAGGACATACCTGTTAGATCTGTTGATTGCCAACCTTGTTGTGAAGGTTTCTTTTGCCCTCGTGGTCTCACTTGCATGATACCTTCAAACCAAAGAAAATTGTACATACGTCTTCATGTGAATGTGTTTCAATGTTCTAATAATTTCAATCATTTCTTGCATTTTTTTGGTTTACTACTGAAGCTTGCCCGTTGGGCTCTTATTGTCCGCGTGCTGAACTCAATAAAACTAGTGGAGTATGTGAACCAATCAATATGCAGATATCGTTATCAGCTACCTCCTGGAAAGCCTAGCCATACTTGTGGTGGGGCAGATATTTGGGCAGATATTGCAAGCAGCAGTGAGGCTGGCCTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGATCAAGTTCTTGCAACTCGAGAAAGAAGACAAGCAAATACACGAGAAAGGGCTGTTCAAAGTGTCAGAGAAACCCAAGCCCGTGAAAAATGGAAATCTGCGAAAGATATTGCTAAAAAGCATGCAGTAGGGCTACAATCGCAATTATCACGTACATTTTCACGCAAACCTTCAAAGAAGCCAGAGTTGAAAGGTTTTGGTTCTAAACATTCAGATTCTTCTATACCACCTACTGGTAAAGGCAAGAAAAAAGATAAAAACAATCTCTCAAAAATAATAAATGATATTGAGGAAAATCCCGATAATCCAGAGGGGTTTCATCTCCAGATAGGAGATAAAAATGTCAAAAAGCAAGCACCAAGGGGCAAACAATTACATACTCAAAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCTTTAGCAGAACAAAACAAGAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAGTGACATTGATATTAGGAAGAGACCTACCATTGAGGTTGCTTTTAAAGATTTAACCCTCACTTTGAAAGGGAAAAACAAACATTTATTGAGATGTGTGACGGGTAAACTATTTCCTGGTAGAGTTTCTGCAGTCATGGGCCCATCTGGGGCTGGTAAGACAACATTTCTTTCAGCTTTAACTGGAAAAGCAACTGGATGTCACACAACTGGGCAAGTTCATGTAAATGGTCAGGAATCTTCTATCAGATCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATCGTGCATGGCAATTTGACAGTGGAGGAGAATTTATGGTTCAGTGCCAGATGCAGACTCTCTGCTGATCTACCAAAAGAAGAAAAGGTATTAGTGGTTGAAAGGGTCATCGAGTCATTAGGTCTACAGGCAATACGAGATTCTTTAGTTGGGACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGATTGGAAATGGTCATGGAACCTTCCCTTCTCATTTTGGATGAACCCACATCTGGTTTGGATAGCTCATCTTCTCAATTACTTCTTAGAGCACTTAGACGTGAAGCTCTTGAAGGAGTAAACATATGTATGGTCCTTCACCAACCGAGTTACTCCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTCTCAAGCATGGGCATTAATGTCCCTGACCGTGTCAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGACCTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCCGTGCCCATGGATATGCTCCAGAGTGTTGAAGGAATGGCCGCCCCAAGTGGTGAAGGCTCATCACGTGGAGGAGCCACTGCTGGACAGACGGATGCTGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTGAAGTGCAATGTTGAGATGAAGAAGGATATCCTTCACATTAACTTCTTAGCTTCAAATGACCTGTCTAATCGGATTGCTGCTTTGAGATCATTCTCATTGGATAAGTTGCACTATTGGCGGGAAAGTTCTTCAGGCATGAGTAGTTTGGCTTACTTTCTATCAAAGGATACTGTTGACCATTTTAGCACAGTTATCAAGCCGCTAGTTTACCTTTCCATGTTTTATTTCTTCAACAATCCAAGATCATCAGTCACAGATAACTATGTTGTTCTGCTCTGTTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCAATCTTTTTACAGCCAGGTCCAGCCCAACTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTTGTAGCAACCTATCAGAATGAAGATGATAGCAAATATGTGAAATATCTATCAGATTTGTGCTACACAAAGTGGGCTCTTGAAGCATTTGTAATATCAAATGCTAAAAGGCCTACTTATCGTGATGGGAATAATTAG 3162 0.414 MASKTPVPLKPTNSKLPPLRGKKDRHTKVNGRERRVLLPPLCAARIFQLTRELGYKTHGETIGWLLRQAEPSIISATGTGISPSMVDVTSSSPSSSSPSSLPILPLPSDDNNVVGQHANSVDVSTDNEINSKETFLPLDFDMFANFNVEFSATEIEMLQSLMTRDADWNGAFNFTKDLTFLTICAQQLKGDITQRMCTEAEILAYGQSFVGGKSGTRSFLKPNINCNLSSWVNGCEPGWGCKANQKVDIDSTKKDIPVRSVDCQPCCEGFFCPRGLTCMIPSNQRKLYIRLHVNVFQCSNNFNHFLHFFGLLLKLARWALIVRVLNSIKLVEYVNQSICRYRYQLPPGKPSHTCGGADIWADIASSSEAGLCFLLIIIYNCSDQVLATRERRQANTRERAVQSVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKPSKKPELKGFGSKHSDSSIPPTGKGKKKDKNNLSKIINDIEENPDNPEGFHLQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMASDIDIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLFPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVHVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYSLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVTYKQLPVRWMLHNGYPVPMDMLQSVEGMAAPSGEGSSRGGATAGQTDAAPSFAGELWQDVKCNVEMKKDILHINFLASNDLSNRIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTVIKPLVYLSMFYFFNNPRSSVTDNYVVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYQNEDDSKYVKYLSDLCYTKWALEAFVISNAKRPTYRDGNN* 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00431 1053 Gene3D - 546 796 IPR027417 -
Lapu11g00431 1053 Pfam TCP family transcription factor 21 115 IPR017887 -
Lapu11g00431 1053 ProSitePatterns ABC transporters family signature. 697 711 IPR017871 GO:0005524|GO:0016887
Lapu11g00431 1053 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 556 797 IPR003439 GO:0005524
Lapu11g00431 1053 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 901 1042 - -
Lapu11g00431 1053 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
Lapu11g00431 1053 FunFam ABC transporter G family member 24 550 792 - -
Lapu11g00431 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 793 IPR027417 -
Lapu11g00431 1053 MobiDBLite consensus disorder prediction 424 469 - -
Lapu11g00431 1053 CDD ABCG_EPDR 554 780 - -
Lapu11g00431 1053 MobiDBLite consensus disorder prediction 84 105 - -
Lapu11g00431 1053 Pfam ABC-2 type transporter 905 1045 IPR043926 GO:0140359
Lapu11g00431 1053 SMART AAA_5 582 783 IPR003593 GO:0016887
Lapu11g00431 1053 MobiDBLite consensus disorder prediction 1 28 - -
Lapu11g00431 1053 Pfam ABC transporter 576 725 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00431 Lapu-Chr11 7561493 7572810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00431 11 101 TCP Transcription Factor Family AT5G08330 59.783 4.82e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu11g00431 ABC_tran 1.1e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00431 - - vum:124832789 990.334