Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00422 ATGCAGAGATCCGGGTACGGTAGCGACGGAATATATCGGTCTCTAAGGCCTTCATTGGTTCTCCCAAACAACCCCAACCTCTCACTCGTCTCATTCCTCTTCCAAAGCGTTTCTTCTTCTCTATCCACAACCGCTCTCGTCGATGCTCACTCTTCTCAAACCCTCTCCTTCGCGCAGCTCAAAGCCCAAGTCGCAAGGCTCGCCCATGGTTTCCTCAAACTAGGCATAAAGAAAAACGACGTCGTCCTCCTCCTCGCTCCCAACTCCATCCACTTCCCCTTATGCTTCCTCGCAGCCACAGCCATCGGAGCTATAGTCTCCACCGCCAATCCCATTTACACCGTTCAAGAACTCTCTCACCAAGTCAAAGATTCCAACCCCAAGCTCGTGATCACAGTCCCTGAACTATGGGACAAAGCAAAAACCCTCAACCTCCCGACCGTCATTCTCAACACCGACAATCTTCATGACCCAATTAAAAGTAAGACTCCAAACGAGGCACCGAAAGTCATGAGTTTCGATGCGGTGATGGAGATTGCGGGGCCGGTGACGGAGCTGCCGGAGAGCGGCATTAAGCAGGGGGACACGGCGGCGCTTTTGTACTCCTCGGGGACCACGGGGCTGAGCAAAGGCGTGGTCCTGACGCACGGGAACTTCATCGCGGCGTCGGTGATGATCGGCATGGACGACGACCTGGCCGGGGATGTAAACGACGTGTTCCTCTGCGTTTTGCCGATGTTTCACGTGTTCGGGCTGGCGGTTCTGACGTACGCGGCGCTGCGGCGAGGGAGCGCGGTGGTGTCGATGGGGAAGTTCGAGTTGGAGGCGTTTCTGAATGCGATTGAGAAGTACAGAGTGACGAAGCTGTGGGTGGTGCCTCCGATCCTGCTTGCCATGGCGAAACAGAGTGTGGTTCAGAACTATAATCTCTCGTCGTTGAAGCGTATTGGTTCAGGTGCTGCTCCTCTTGGGAAAGACTTGATGGAAGAATGTGGCAGGCGTTTTCCTCATGTTGCCATTTGTCAGGGCTATGGCATGACAGAGACTTGTGGCGTTGTTTCTGTGGAGAATCCAAGAGTGGGGATTCGTCATACTGGTTCATCGGGAATGCTGACTTCGGGAGTGGAAGCTCAAATAGTAAGTGTGGATACACAAAAGCCTCTTCCTCCTAGACAGCTGGGGGAAATATGGGTGCGAGGTCCTAACATGATGCAAGGTTATCACAACAATTCACAGGCCACGAGATTGACTATAGATGAAAAGGGGTGGGTGCATACAGGAGATGTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAGCTAATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAACTTGAAGGCCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTCCCATATCCAGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCACTGACTGAAGAAGAAATTAAGAAGTTTATTGCTGATCAGGTTGCACCTTTCAAAAAATTGCGAAGGGTATCATTCATCAGTAGTGTGCCAAAGACATCTTCAGGAAAAATTCTTAGAAGAGAGATTACTGCAAAAGCACGATCTAAAATATAA 1647 0.5027 MQRSGYGSDGIYRSLRPSLVLPNNPNLSLVSFLFQSVSSSLSTTALVDAHSSQTLSFAQLKAQVARLAHGFLKLGIKKNDVVLLLAPNSIHFPLCFLAATAIGAIVSTANPIYTVQELSHQVKDSNPKLVITVPELWDKAKTLNLPTVILNTDNLHDPIKSKTPNEAPKVMSFDAVMEIAGPVTELPESGIKQGDTAALLYSSGTTGLSKGVVLTHGNFIAASVMIGMDDDLAGDVNDVFLCVLPMFHVFGLAVLTYAALRRGSAVVSMGKFELEAFLNAIEKYRVTKLWVVPPILLAMAKQSVVQNYNLSSLKRIGSGAAPLGKDLMEECGRRFPHVAICQGYGMTETCGVVSVENPRVGIRHTGSSGMLTSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMMQGYHNNSQATRLTIDEKGWVHTGDVGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIKKFIADQVAPFKKLRRVSFISSVPKTSSGKILRREITAKARSKI* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00422 548 SUPERFAMILY Acetyl-CoA synthetase-like 21 546 - -
Lapu11g00422 548 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Lapu11g00422 548 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Lapu11g00422 548 Pfam AMP-binding enzyme 41 450 IPR000873 -
Lapu11g00422 548 Gene3D - 9 445 IPR042099 -
Lapu11g00422 548 FunFam 4-coumarate--CoA ligase 2 446 547 - -
Lapu11g00422 548 CDD 4CL 21 539 - -
Lapu11g00422 548 Gene3D - 446 547 IPR045851 -
Lapu11g00422 548 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 541 - -
Lapu11g00422 548 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00422 Lapu-Chr11 7355324 7359851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00422 1 548 Monolignol Biosynthesis Gene Families AT4G05160 68.488 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00422 K01904 - gmx:100808944 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00492 5 4385463 4389346 Lapu11g00422 11 7355324 7359851 PCT