Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00407 ATGTTTGCATTGCATTTTCAATCATCTTTTCCTCTTCCCTTCTGTCGCTCCCTAACCGTTAGGGTTTCCTCTCTCTTCTCTTTCCCTCTGTCTCTCTCCTCCACCTCTTTCCGCGCCATGTCCAAGCCACCCTCCGCCTTCGACGCTCTCATGTCCGGCGCCCGCGCCGCCGCCAAGAAGAATTCCCAATCCAAACCCCAAACACCCAAACTTCCGTCATCCCCCAAGAAAAGAAAATCCTCACACTCCACTTCCTCACAAAACCCTACCAACCTCAAATCCCCCAAATTGCCTTCTCCGCCCATAACCGTTGAAGCGGAGCTAGCTGTTGAACCGGAACAAGTTGTTAAACCAGAAGAAGCTGTTAAACCGGAAGAAGCCGTAAAGCCGGACCCGCAGAAGCTCCGCCACTTGTCGTCGTCTGCTTCTTCGAACGGGAAGACCGTGGAGCTGAAGAAGCAAGTTCCGCGGCTGAAGCAGAAACCCTCGAGTTTCGATCCCGCTTCGGTGATTGCATGGGAGAAGGGACAGCCCGTGCCGTTTCTCTTTCTCGCCTTGGCATTCGATATGATTTCTCAGGAAACTGGAAGAATCGTTATCACTGAAATTGTTTGCAATATGCTACGGACTGTGATGCTCGTCACGCCGCAGGATCTTGTTCCCGTCGTTTACCTATCCGCGAATCGGATTGCCCCTGCGCATGAAGGGTTGGAATTGGGAATCGGCGAGTCGATCATTTCCAAGGCGCTCGCTGAGGCATATGGAAGGAACGAGGCGTGGATTAAGACTCAGTATCAGAAAAAAGGAGATTTGGGCTTGGTTGCCAAAGAAAGCCGTTCATCTCAACGTATGATGTGGAAGCCTGAAGCATTGACTATCAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAAAAAAAGAATCATATCAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTTTGCTTCAGACAAAGTTGCGAATTGGTTATGCTGAGCAAACTCTCTTGGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACACTCTAAACCGCCTCCTGAAATTCAGTCTCCTTTAGACAAGGCTTCCGAAATTGTTAAGCAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTACTTACGGAGGGTATATGGATGCTTCCAAAGAATTGTAAATTTACTCCTGGTGTTCCAATTAGACCTATGCTGTCAAAGGCAGCAAAAAGTGTATCTGAAATTCTAAACAAATTCCAGGATGTCGAGTTTACTTGTGAATACAAATATGATGGAGAGCGTGCCCAGATTCATTACCTGGAGAATGGCTCAGTTGAGATTTACAGTAGACAAGCAGAACGGAACACTGAGAAGTTTCCTGATGTTGCTGCTGCAGTTTCAAGGTTAAAGAAAACAGGTGTATCTTCATTTATTCTTGACTGTGAAATTGTTGGATATGATCGCTCAACACAGAAGCTTCTTTCTTTCCAGATGCTTAGTACTCGGGCTCGCAAGAAAGTAGAAATTGAAGATATAAAGGTTAATGTTTGTGTGTTTGCTTTTGATTTGTTGTATCTAAATGGCCAAGAACTTCTTCAGGAAAACCTGAGAGTCCGAAGAGAGCATCTTTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCGACGGCATTAACTTCAAATGATGTTGACGAGATACAGACTTTCCTTGACCAAGCTGTTGGGGCAAGTTGTGAGGGATTAATTATTAAAACATTAAACGAGGATGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATTTAGGGGACTCTGTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGCGGAAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGCAAGATTGGAACGGGATTTTCTGAATCTGATCTTGTAGAGCGTTCTTCCAGTCTTAGTTCTAAAGTGATTTCCAAACCAAAGTCATACTATAGATTTGGAGAAACAATCAATCCTGATGTGTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCGGCAGACCTGACCATCAGCCCTGTCCACCGCGCTGCAGCGGGCATAGTAGATCCAAACAAGGGCATATCTCTTCGATTTCCACGTCTACTTCGACTCCGGCATGACAAAGCTCCCGAACAGGCCACATCATCTCAGCAGATTGCTGAGTTGTATAAAGCTCAAAAACAGAATCAAGTGAACAAACAAGATGACGATGATGAAGAAGATTATTGA 2391 0.4475 MFALHFQSSFPLPFCRSLTVRVSSLFSFPLSLSSTSFRAMSKPPSAFDALMSGARAAAKKNSQSKPQTPKLPSSPKKRKSSHSTSSQNPTNLKSPKLPSPPITVEAELAVEPEQVVKPEEAVKPEEAVKPDPQKLRHLSSSASSNGKTVELKKQVPRLKQKPSSFDPASVIAWEKGQPVPFLFLALAFDMISQETGRIVITEIVCNMLRTVMLVTPQDLVPVVYLSANRIAPAHEGLELGIGESIISKALAEAYGRNEAWIKTQYQKKGDLGLVAKESRSSQRMMWKPEALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIQSPLDKASEIVKQVYSVLPDYDKIISALLTEGIWMLPKNCKFTPGVPIRPMLSKAAKSVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVSRLKKTGVSSFILDCEIVGYDRSTQKLLSFQMLSTRARKKVEIEDIKVNVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEESGFLQFATALTSNDVDEIQTFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDNLGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFSESDLVERSSSLSSKVISKPKSYYRFGETINPDVWFEASEVWEVKAADLTISPVHRAAAGIVDPNKGISLRFPRLLRLRHDKAPEQATSSQQIAELYKAQKQNQVNKQDDDDEEDY* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00407 796 Gene3D - 631 794 IPR012340 -
Lapu11g00407 796 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 414 632 - -
Lapu11g00407 796 FunFam DNA ligase 157 424 - -
Lapu11g00407 796 ProSitePatterns ATP-dependent DNA ligase signature 2. 600 626 IPR016059 GO:0003909
Lapu11g00407 796 FunFam DNA ligase 451 576 - -
Lapu11g00407 796 Gene3D DNA ligase/mRNA capping enzyme 451 576 - -
Lapu11g00407 796 Pfam ATP dependent DNA ligase C terminal region 651 762 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lapu11g00407 796 MobiDBLite consensus disorder prediction 136 150 - -
Lapu11g00407 796 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 62 794 - -
Lapu11g00407 796 SUPERFAMILY Nucleic acid-binding proteins 634 780 IPR012340 -
Lapu11g00407 796 MobiDBLite consensus disorder prediction 54 160 - -
Lapu11g00407 796 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 446 454 IPR016059 GO:0003909
Lapu11g00407 796 Gene3D - 432 630 - -
Lapu11g00407 796 ProSiteProfiles ATP-dependent DNA ligase family profile. 528 664 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lapu11g00407 796 NCBIfam ATP-dependent DNA ligase 238 778 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lapu11g00407 796 MobiDBLite consensus disorder prediction 777 796 - -
Lapu11g00407 796 Pfam ATP dependent DNA ligase domain 422 626 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lapu11g00407 796 MobiDBLite consensus disorder prediction 57 93 - -
Lapu11g00407 796 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 162 413 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lapu11g00407 796 Gene3D - 157 424 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lapu11g00407 796 FunFam DNA ligase 631 790 - -
Lapu11g00407 796 MobiDBLite consensus disorder prediction 112 133 - -
Lapu11g00407 796 Pfam DNA ligase N terminus 180 355 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lapu11g00407 796 CDD OBF_DNA_ligase_I 634 779 - -
Lapu11g00407 796 CDD Adenylation_DNA_ligase_I_Euk 411 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00407 Lapu-Chr11 7185712 7194686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00407 23 791 Core DNA Replication Machinery Family AT1G08130 65.553 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00407 K10747 - gmx:100783155 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00407 11 7185712 7194686 Lapu11g00407 11 7185712 7194686 ECH