Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00405 ATGGAAACCACTGAAGAGGTTGTTTCATTAAATTGTCTTCTTGTATCAGAGAACTCTGAATCTAGCCCAACTCAACTTTCGGCTATGGAACTCGAGATTCAGAATTTTGGGTGCACGCATTACAGAAGGAGATGCAAGATCAGAGCGCCGTGTTGTGATGAGGTTTTTTCCTGTAGGCATTGCCATAATGAAGCTAAGAACTCTGAGGAGATTGATGCTGTGGATCGGCATGATGTTCCTCGCCATGAAATTAAGAAGGTTATCTGCTCCTTATGTGACACAGAGCAAGATGTTCAACAGTACTGCATAAACTGTGGAGTATGCATGGGCAAGTATTTTTGTGATATTTGCAAATTCTTTGATGATGATACTTCAAAGAACCAATACCACTGTGATGAATGTGGAATTTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGCAAGAGATGTGGATGTTGCTACTCCAAGGTAATGGAAAAGGGGCACCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTCTGCTTTGAGTATCTATTTGATACACTAAGAGAAATCAGTGTCTTGCCTTGCGCACATACTATACATTTAGACTGTGTCAAAGAAATGGAAAAACATCATAGATACACATGTCCTGTGTGCTCAAAATCCTTCTGTGACATGTCAAGTTTGTGGAAGAAGCTTGACAAAGTGGTTGCCTTAACTCCAATGCCTGAAACCCTAAAAAACAAGATGGTGTGGATACTTTGCAATGATTGTGGAGTGAACTCTCATGTACAATTCCATATTGTGGCCCATAAGTGCATAAGTTGCAATTCATACAACACAAGACAGATACAGGGAGCACCTGCTACATCAAGCTCATCTAGAGTGACCCAAATGGTGACATGA 897 0.4125 METTEEVVSLNCLLVSENSESSPTQLSAMELEIQNFGCTHYRRRCKIRAPCCDEVFSCRHCHNEAKNSEEIDAVDRHDVPRHEIKKVICSLCDTEQDVQQYCINCGVCMGKYFCDICKFFDDDTSKNQYHCDECGICRTGGKDNFFHCKRCGCCYSKVMEKGHRCVEGAMHHNCPVCFEYLFDTLREISVLPCAHTIHLDCVKEMEKHHRYTCPVCSKSFCDMSSLWKKLDKVVALTPMPETLKNKMVWILCNDCGVNSHVQFHIVAHKCISCNSYNTRQIQGAPATSSSSRVTQMVT* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00405 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 246 IPR013083 -
Lapu11g00405 298 FunFam RING finger and CHY zinc finger domain-containing protein 1 245 289 - -
Lapu11g00405 298 SUPERFAMILY RING/U-box 172 222 - -
Lapu11g00405 298 SUPERFAMILY Zinc hairpin stack 110 167 IPR037275 -
Lapu11g00405 298 Pfam Zinc-ribbon 221 279 IPR039512 -
Lapu11g00405 298 Gene3D - 247 287 - -
Lapu11g00405 298 Pfam CHY zinc finger 38 119 IPR008913 GO:0008270
Lapu11g00405 298 SUPERFAMILY CHY zinc finger-like 35 109 IPR037274 GO:0008270
Lapu11g00405 298 SMART ring_2 174 216 IPR001841 -
Lapu11g00405 298 ProSiteProfiles Zinc finger CHY-type profile. 31 107 IPR008913 GO:0008270
Lapu11g00405 298 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
Lapu11g00405 298 ProSiteProfiles Zinc finger CTCHY-type profile. 109 173 IPR017921 -
Lapu11g00405 298 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 18 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00405 Lapu-Chr11 7168131 7175856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00405 32 291 C2H2 Transcription Factor Family AT3G18290 40.892 8.87e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g00405 zf-CHY 5.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00405 K10144 - gmx:100812709 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00405 11 7168131 7175856 Lapu11g00405 11 7168131 7175856 ECH