Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00403 ATGGACACAACAGATTTTCATCAAGAGACTCTAGTTCACATTGATGACTTTGAGCTGCACGACTTTGTTGAAGATCCCAACATAGATCAGTTGATCAACTTGATTGGTTTGGGGAAGAAAGATGCTATTTATGACTTCAATTCCGAGCTTATCAATGAAGCATTCATTGACAACTCTTTCTTTCCACACCCTGCAATCCCATCTGATCAGTGCAATAATAATGCTCTGAATGTCTATGATTCAAACTCTACACTTAACTCCTTCTCTTATTTTGATGGGGAAGCTAAAGGAGGGGGAGGAGAAGAGGAAGATGAGATGGAACACTCATCTGCAACAACAACCACAACAACACCTACTAAGAGTCTTTTTTCCAAGTCAAAGCCAAAAACTGATAGGAGCAAAACTTTGATTTCTGAGAGGAGGAGAAGGGACAGAATGAAGGAAAAGCTTTATGCATTGAGATCTTTGGTTCCCTCCATAACTAAGATGGATAAGGCTTCTATTATTGGAGATGCTGTTTCATATATGCATGAGCTTCAAGCACAAGCCAATATGCTTAAAGCTGAGGTTGAAGGACTTGAAACATCCTTACTGGTGTCTAAAAGTCATCAAGGATCAATTGAAAATCCCATGAAGGTTGAATTCACCAATAAAATCCTTTCAATACGCAAGAAGATAATCCAGATGGACATATTTCAAGTAGATGTAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGAGTGGCTGCCTCATTATACAAATCTCTGGAGTCTCTGACAGGCTTCCATGTTCAGAACTCAAACTTGTCCACAGTTTGTAACAGTTTTCAACTTACATTTTCATTGAATGTGAAAAGCCCTGAGCCAGAAATTAACCTGCCCAACTTGAAGATTTGGGTGTCTGAAGCTTTTGTGAAGCAAGGCTTTGAATTCATACCATTTTTT 954 0.3857 MDTTDFHQETLVHIDDFELHDFVEDPNIDQLINLIGLGKKDAIYDFNSELINEAFIDNSFFPHPAIPSDQCNNNALNVYDSNSTLNSFSYFDGEAKGGGGEEEDEMEHSSATTTTTTPTKSLFSKSKPKTDRSKTLISERRRRDRMKEKLYALRSLVPSITKMDKASIIGDAVSYMHELQAQANMLKAEVEGLETSLLVSKSHQGSIENPMKVEFTNKILSIRKKIIQMDIFQVDVKGFYVKIVCNKGEGVAASLYKSLESLTGFHVQNSNLSTVCNSFQLTFSLNVKSPEPEINLPNLKIWVSEAFVKQGFEFIPFF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00403 318 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 74 303 - -
Lapu11g00403 318 MobiDBLite consensus disorder prediction 93 141 - -
Lapu11g00403 318 Coils Coil 176 196 - -
Lapu11g00403 318 Pfam Helix-loop-helix DNA-binding domain 137 180 IPR011598 GO:0046983
Lapu11g00403 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 200 IPR036638 GO:0046983
Lapu11g00403 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Lapu11g00403 318 SMART finulus 136 185 IPR011598 GO:0046983
Lapu11g00403 318 Gene3D - 123 196 IPR036638 GO:0046983
Lapu11g00403 318 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 126 196 - -
Lapu11g00403 318 MobiDBLite consensus disorder prediction 110 124 - -
Lapu11g00403 318 MobiDBLite consensus disorder prediction 125 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00403 Lapu-Chr11 7153031 7154317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00403 10 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.633 4.71e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g00403 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00403 K26214 - gmx:100778649 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00499 5 4474824 4476286 Lapu11g00403 11 7153031 7154317 PCT