Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00401 ATGGAGATGGAAGGGTTATTAGATTCTAATTCCAATTCTAGTTCTAGCCAGAGCAACATAGCCAAGGGAAAACGCACCAAAAGGATGAGGCTTTTGTCCCCTTCCGGTGTCGTCGTTGTTAGCACCGCCACCACTGCTGCAGTCACCTCCACTAGTTGCTCCAGTCCTAATTCTGGTGGCTCCTCCACCACCACTTACGAGAGCGAAGAGGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCACCATCTTCATCATGAACCTCATCAACACAAGCAACTAGTTGAAGATCATGGTCTTGGAAACTGTAACGGTGTCAAGACAGAAAAGGGTAACGGAAACACTACCAACACCGCCGCAACAACCGCTGTTAACGCCAAAGTTGGTTTCTTTATTTATGAGTGCAAAACGTGTAACCGATCGTTTCCTTCGTTTCAAGCACTTGGTGGACATAGGGCGAGTCACAAAAAGCCCAAACTCGTGGCTGAAGAGAAAAAAGCACCACCCTGTCAATTGCCACACATGGTTGTTACCAACTATGATCGGTTTGAAGAGGATAAGGTTAAAAGTGGTTCTCCAATTTCCCTTCAATTGGGTCATGGCAACAACAAGAAGGGTAATAAGATTCATGAATGTTCCATTTGTGGTTCTGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCAACAAACACCAACACTGTTGACACATCAAGTTGTAACACCGTCGCCGCTGCCGCGGCCGCCGCCACTGTTTCACCTCCGCGAAACATCTTGCAATTGGATCTTAACCTGCCGGCCCCGGAGGACGATATCCGGGAGGCTAAGTTTCAATTTCCGGTAACAACTCAGGTGCTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG 927 0.4746 MEMEGLLDSNSNSSSSQSNIAKGKRTKRMRLLSPSGVVVVSTATTAAVTSTSCSSPNSGGSSTTTYESEEEDMANCLILLAQGGESHHLHHEPHQHKQLVEDHGLGNCNGVKTEKGNGNTTNTAATTAVNAKVGFFIYECKTCNRSFPSFQALGGHRASHKKPKLVAEEKKAPPCQLPHMVVTNYDRFEEDKVKSGSPISLQLGHGNNKKGNKIHECSICGSEFTSGQALGGHMRRHRASTNTNTVDTSSCNTVAAAAAAATVSPPRNILQLDLNLPAPEDDIREAKFQFPVTTQVLVGTPALVDCLY* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00401 308 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Lapu11g00401 308 SMART c2h2final6 138 160 IPR013087 -
Lapu11g00401 308 SMART c2h2final6 215 237 IPR013087 -
Lapu11g00401 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Lapu11g00401 308 PANTHER ZINC FINGER PROTEIN ZAT5 58 290 - -
Lapu11g00401 308 MobiDBLite consensus disorder prediction 1 22 - -
Lapu11g00401 308 SUPERFAMILY beta-beta-alpha zinc fingers 138 237 IPR036236 -
Lapu11g00401 308 MobiDBLite consensus disorder prediction 1 29 - -
Lapu11g00401 308 Gene3D Classic Zinc Finger 136 237 - -
Lapu11g00401 308 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Lapu11g00401 308 Pfam C2H2-type zinc finger 215 239 - -
Lapu11g00401 308 Pfam C2H2-type zinc finger 138 163 - -
Lapu11g00401 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00401 Lapu-Chr11 7131764 7132847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00401 15 308 C2H2 Transcription Factor Family AT2G28200 41.613 7.35e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g00401 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00401 - - gmx:100782408 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00549 6 5759760 5760854 Lapu11g00401 11 7131764 7132847 ECH
Lapu11g00401 11 7131764 7132847 Lapu11g00401 11 7131764 7132847 ECH