Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00399 ATGGCAATCTCCACCATGAACGCAACACTCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGTCAGCAAATGACTCTTGGTTCCTCTTCAGGTACTAGTATTATTGCTAATCAATCGCACCGAAACCAGAATCAGCAACAACTTGACCATGATAGATTGTTATCACCTCAGCATCCATCAAACTTTGGCAACAACAATAGGGGCATGCTTAGTATGAGTAGCATTAGCATGAGTTCAGATATGATTGGAGGGCAGAGTGATTTCTTATCTAGTATTGAAGGAGGGACACTGGATTGGTTTGCTGAAAGCTATAATAATAACAATAGTGGAGATTGTAACATTAAGGATGAAGAAGCCAACATCAACATCATGGGAGAGAGTGATATAATCGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCGTATTTTTGCCAAGTGTGTGGGAAAGGATTTAAGCGTGATGCCAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAACTGCAGCCTTGAGCAACCCAATGAAAAGCAAGGATAGTTTAATGGGTGAGGGAAGTTCCACCAAGAGATATTCGTGCCCCCAAGAAGGGTGTAGGTGGAACCAAAAACATGCCAAGTTCCAGCCCTTGAAGTCAATGATCTGTGCTAAAAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAACAGTTTTCCGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCCTGTGGCACAACGTTTTCTAGGAAAGACAAGCTTATGGGCCATGTTGCTTTGTTCGTGGGGCACACCCCAGCTATTCATGGCTTGTCAAGATATGTTCGATGA 903 0.443 MAISTMNATLQEIIVAATSMRFTCQQMTLGSSSGTSIIANQSHRNQNQQQLDHDRLLSPQHPSNFGNNNRGMLSMSSISMSSDMIGGQSDFLSSIEGGTLDWFAESYNNNNSGDCNIKDEEANINIMGESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTTAALSNPMKSKDSLMGEGSSTKRYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPAIHGLSRYVR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00399 300 FunFam Zinc finger protein 574 145 169 - -
Lapu11g00399 300 SUPERFAMILY beta-beta-alpha zinc fingers 144 172 IPR036236 -
Lapu11g00399 300 SMART c2h2final6 146 168 IPR013087 -
Lapu11g00399 300 SMART c2h2final6 236 258 IPR013087 -
Lapu11g00399 300 SMART c2h2final6 198 231 IPR013087 -
Lapu11g00399 300 Gene3D Classic Zinc Finger 140 204 - -
Lapu11g00399 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Lapu11g00399 300 Pfam Zinc finger, C2H2 type 146 168 IPR013087 -
Lapu11g00399 300 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Lapu11g00399 300 Gene3D Classic Zinc Finger 234 284 - -
Lapu11g00399 300 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 2 292 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00399 Lapu-Chr11 7117382 7118738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00399 1 297 C2H2 Transcription Factor Family AT5G22890 52.349 1.49e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g00399 zf-C2H2 6.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00399 - - vum:124833786 554.673