Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu11g00399 | ATGGCAATCTCCACCATGAACGCAACACTCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGTCAGCAAATGACTCTTGGTTCCTCTTCAGGTACTAGTATTATTGCTAATCAATCGCACCGAAACCAGAATCAGCAACAACTTGACCATGATAGATTGTTATCACCTCAGCATCCATCAAACTTTGGCAACAACAATAGGGGCATGCTTAGTATGAGTAGCATTAGCATGAGTTCAGATATGATTGGAGGGCAGAGTGATTTCTTATCTAGTATTGAAGGAGGGACACTGGATTGGTTTGCTGAAAGCTATAATAATAACAATAGTGGAGATTGTAACATTAAGGATGAAGAAGCCAACATCAACATCATGGGAGAGAGTGATATAATCGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCGTATTTTTGCCAAGTGTGTGGGAAAGGATTTAAGCGTGATGCCAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAACTGCAGCCTTGAGCAACCCAATGAAAAGCAAGGATAGTTTAATGGGTGAGGGAAGTTCCACCAAGAGATATTCGTGCCCCCAAGAAGGGTGTAGGTGGAACCAAAAACATGCCAAGTTCCAGCCCTTGAAGTCAATGATCTGTGCTAAAAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAACAGTTTTCCGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCCTGTGGCACAACGTTTTCTAGGAAAGACAAGCTTATGGGCCATGTTGCTTTGTTCGTGGGGCACACCCCAGCTATTCATGGCTTGTCAAGATATGTTCGATGA | 903 | 0.443 | MAISTMNATLQEIIVAATSMRFTCQQMTLGSSSGTSIIANQSHRNQNQQQLDHDRLLSPQHPSNFGNNNRGMLSMSSISMSSDMIGGQSDFLSSIEGGTLDWFAESYNNNNSGDCNIKDEEANINIMGESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTTAALSNPMKSKDSLMGEGSSTKRYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPAIHGLSRYVR* | 301 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu11g00399 | 300 | FunFam | Zinc finger protein 574 | 145 | 169 | - | - | |
Lapu11g00399 | 300 | SUPERFAMILY | beta-beta-alpha zinc fingers | 144 | 172 | IPR036236 | - | |
Lapu11g00399 | 300 | SMART | c2h2final6 | 146 | 168 | IPR013087 | - | |
Lapu11g00399 | 300 | SMART | c2h2final6 | 236 | 258 | IPR013087 | - | |
Lapu11g00399 | 300 | SMART | c2h2final6 | 198 | 231 | IPR013087 | - | |
Lapu11g00399 | 300 | Gene3D | Classic Zinc Finger | 140 | 204 | - | - | |
Lapu11g00399 | 300 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 146 | 173 | IPR013087 | - | |
Lapu11g00399 | 300 | Pfam | Zinc finger, C2H2 type | 146 | 168 | IPR013087 | - | |
Lapu11g00399 | 300 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 148 | 168 | IPR013087 | - | |
Lapu11g00399 | 300 | Gene3D | Classic Zinc Finger | 234 | 284 | - | - | |
Lapu11g00399 | 300 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 2 | 292 | IPR044300 | GO:0010044|GO:0010447 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu11g00399 | Lapu-Chr11 | 7117382 | 7118738 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu11g00399 | 1 | 297 | C2H2 Transcription Factor Family | AT5G22890 | 52.349 | 1.49e-101 | 300 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lapu11g00399 | zf-C2H2 | 6.1e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu11g00399 | - | - | vum:124833786 | 554.673 |