Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00392 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTCCTTTCCTCAGGGACTCCCATTCCCAGTCGTCTAGGAGAGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACAAGTGGTGAATCAAGTTCAAGGAAGACCTGGTGAAGTGCCTCTTGAGCAAAGGAGGGAAGGGTTGATAGCGGAGCTCTCTCAGGAAGATAGACTGGATATCCAAGAGAGAGGGCAGGGGCATGTTTTAGAAGATGCAGTTTTGGGTGAGAATGAATCTGAAACATGGTCACAGTCACAAAGTCAAAATGAGTCCCATGATGATCACGAGGATTTAAATAATTCTAGCTGTGAAAACTCTTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCCAGGGATCATGTATCAAACGTATCCAGAAGAAATAGTGGTTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGAATTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCATCTGGGGAAAACAGGGAAGAACCATCTGCTCAAATTGGTACACAAATTGAACGTGTTCGTGATGGACTCGTTGTTAACCAGAATGGGGGCCAAAATGACCATACACGGAGGGGCATACGTAAATTATGTGGCCGACAGGCTATGCTTGATATGCTTAAGAAGGCTGAAAGAGAAAGGCAAAGAGAAATTGAGGACTTGTTGGTACATCGGGCTGTATCTCGATTTCCCTATCGTAATCGTATTCAGGCATTGCTTAGAGGCAGATTCTTGCGAAATGATAGACCTGTTGATAATAACAGGCCTCTTTCTGTTGCAGAAAGTGAATTGGGCTTTTTGAGGCGTAAACAAACTGTATCAGGTCTAAGGGAGGGATTTTTCGCTAGAAAGGAGAATAGTGGTTGCAGCAGTCAAGCAACCAGCAATGTATCTGATACCTCGTCAAATGTTGATATTGATTTTAACACCAATGAACAAATGGGATCAAGCAGTTCACATTTGGTCCCAATTGTATATTCTGAACAGTCTGACCCTAATGACAAAGGAAGTGATGGTCTTAGGGTATCTGGTGTCCAGAGCTATGTACAAGGTACCACGTCTGAGAATTTAAATTGGCAAGAATCTACTGCTCAAGTAGGAGATGTATTGCAGCGTTTTCCTATTGAATCACTAGATTGTCAATCATCATGTAGTGCTGGTGTTGAAAGAGTTAACAACACTGAGCAAAATGTTGAAGGGATGCCAACTGAATACAGTGCAGATGAAATTACCCAACAAAGCTTGCGAATTGAAGATTCAGTGCATAGTAATAACCAGGAATTCAATGAGGTGTATATTGAGCATTCTGAGCTGGGTGATATAAATGGTAGTGAAAACAATTCTTCAAATCATGACGTTCATATGGATGGTAATGTTGTTGATGATGTAAATTGGAATGAATCTGGTGCTCTAGAAGTAGAACAGCCAGAAGAAGCTTTTGAAAATGATGGAAGTGAGTGGTATCAGAATAATACCGAATGGAGAAATAGCTCTGAGGAAAATGTGGATGATAATCAGCTCAGTAATTCAGCAAACGAGTGGCCTGAAAACACTTTGGAAAATGGGGATGGAGAAAACACTAATCTGCAAGAATCTCATGAAGCGTGGCAAGAGGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCAGATCATGAAAGTGCTCGAGTTGGTAGAATTCGAGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTTAGGGAACTTCTTAATAGGAGAAGTGTCTCTAATCTCCTTCGCAGCAGTTTCAGGGATAGTCTTGATCAGTTAATACAATCATATGTTCAAAGGCAAGGTAATGCACACATTGACTGGGAATTGCAAGAAACAACCCCCTCATCTGACTTAGCTGAGCAGGACCTTGAGCAGCAGAGTAGGGATCGAATTGTTGATCAGGAGGGTCCTGTTAATAGTCCACTTGATCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTATGGGACCAGCACCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGGAATTGATTGGGAGATTGTTAATGACATGAGAATTGACATGGCTCGATTGCAACAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTGCAGCGCTCCATAAGACAAGAAGTTTCTGCAGCCTTAAATCGCTCTGCTGGTTCATCAGGAATACATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGTCTTTGCTGTGTATGCTGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAGAAAAAAATGCCCTATGTGTCAAGCTCCTGTGGTGGAGGTGATACGTGCTTACTCTATACAATAG 2589 0.4287 MAIAGLHSVSVLDSPFLRDSHSQSSRRGGEGRRGSTRSSSLLQMWREIEDEQVVNQVQGRPGEVPLEQRREGLIAELSQEDRLDIQERGQGHVLEDAVLGENESETWSQSQSQNESHDDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSNVSRRNSGSRGEWLGETEQERVRIIREWVQMSSQQRSVSSGENREEPSAQIGTQIERVRDGLVVNQNGGQNDHTRRGIRKLCGRQAMLDMLKKAERERQREIEDLLVHRAVSRFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRKQTVSGLREGFFARKENSGCSSQATSNVSDTSSNVDIDFNTNEQMGSSSSHLVPIVYSEQSDPNDKGSDGLRVSGVQSYVQGTTSENLNWQESTAQVGDVLQRFPIESLDCQSSCSAGVERVNNTEQNVEGMPTEYSADEITQQSLRIEDSVHSNNQEFNEVYIEHSELGDINGSENNSSNHDVHMDGNVVDDVNWNESGALEVEQPEEAFENDGSEWYQNNTEWRNSSEENVDDNQLSNSANEWPENTLENGDGENTNLQESHEAWQEDGGFQEAVENWLGGPSDHESARVGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVQRQGNAHIDWELQETTPSSDLAEQDLEQQSRDRIVDQEGPVNSPLDLPSLPIPPPLPLWDQHHHHRDNWSQNDINNQRLGIDWEIVNDMRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIHDCESPEDKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQSRKKCPMCQAPVVEVIRAYSIQ* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00392 862 MobiDBLite consensus disorder prediction 192 217 - -
Lapu11g00392 862 SUPERFAMILY RING/U-box 809 855 - -
Lapu11g00392 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 794 860 IPR013083 -
Lapu11g00392 862 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 446 862 - -
Lapu11g00392 862 MobiDBLite consensus disorder prediction 538 570 - -
Lapu11g00392 862 MobiDBLite consensus disorder prediction 483 497 - -
Lapu11g00392 862 Coils Coil 243 263 - -
Lapu11g00392 862 Coils Coil 738 765 - -
Lapu11g00392 862 Pfam Zinc finger, C3HC4 type (RING finger) 807 854 - -
Lapu11g00392 862 CDD mRING-HC-C3HC5_NEU1 810 859 - -
Lapu11g00392 862 MobiDBLite consensus disorder prediction 101 136 - -
Lapu11g00392 862 MobiDBLite consensus disorder prediction 192 209 - -
Lapu11g00392 862 MobiDBLite consensus disorder prediction 482 504 - -
Lapu11g00392 862 MobiDBLite consensus disorder prediction 17 39 - -
Lapu11g00392 862 ProSiteProfiles Zinc finger RING-type profile. 810 849 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00392 Lapu-Chr11 7056122 7061590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00392 810 856 C3H Transcription Factor Family AT3G06140 40.426 2.23e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00392 - - gmx:100801329 1422.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00392 11 7056122 7061590 Lapu11g00392 11 7056122 7061590 ECH
Lapu5g00507 5 4551790 4558464 Lapu11g00392 11 7056122 7061590 PCT