Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu11g00392 | ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTCCTTTCCTCAGGGACTCCCATTCCCAGTCGTCTAGGAGAGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACAAGTGGTGAATCAAGTTCAAGGAAGACCTGGTGAAGTGCCTCTTGAGCAAAGGAGGGAAGGGTTGATAGCGGAGCTCTCTCAGGAAGATAGACTGGATATCCAAGAGAGAGGGCAGGGGCATGTTTTAGAAGATGCAGTTTTGGGTGAGAATGAATCTGAAACATGGTCACAGTCACAAAGTCAAAATGAGTCCCATGATGATCACGAGGATTTAAATAATTCTAGCTGTGAAAACTCTTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCCAGGGATCATGTATCAAACGTATCCAGAAGAAATAGTGGTTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGAATTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCATCTGGGGAAAACAGGGAAGAACCATCTGCTCAAATTGGTACACAAATTGAACGTGTTCGTGATGGACTCGTTGTTAACCAGAATGGGGGCCAAAATGACCATACACGGAGGGGCATACGTAAATTATGTGGCCGACAGGCTATGCTTGATATGCTTAAGAAGGCTGAAAGAGAAAGGCAAAGAGAAATTGAGGACTTGTTGGTACATCGGGCTGTATCTCGATTTCCCTATCGTAATCGTATTCAGGCATTGCTTAGAGGCAGATTCTTGCGAAATGATAGACCTGTTGATAATAACAGGCCTCTTTCTGTTGCAGAAAGTGAATTGGGCTTTTTGAGGCGTAAACAAACTGTATCAGGTCTAAGGGAGGGATTTTTCGCTAGAAAGGAGAATAGTGGTTGCAGCAGTCAAGCAACCAGCAATGTATCTGATACCTCGTCAAATGTTGATATTGATTTTAACACCAATGAACAAATGGGATCAAGCAGTTCACATTTGGTCCCAATTGTATATTCTGAACAGTCTGACCCTAATGACAAAGGAAGTGATGGTCTTAGGGTATCTGGTGTCCAGAGCTATGTACAAGGTACCACGTCTGAGAATTTAAATTGGCAAGAATCTACTGCTCAAGTAGGAGATGTATTGCAGCGTTTTCCTATTGAATCACTAGATTGTCAATCATCATGTAGTGCTGGTGTTGAAAGAGTTAACAACACTGAGCAAAATGTTGAAGGGATGCCAACTGAATACAGTGCAGATGAAATTACCCAACAAAGCTTGCGAATTGAAGATTCAGTGCATAGTAATAACCAGGAATTCAATGAGGTGTATATTGAGCATTCTGAGCTGGGTGATATAAATGGTAGTGAAAACAATTCTTCAAATCATGACGTTCATATGGATGGTAATGTTGTTGATGATGTAAATTGGAATGAATCTGGTGCTCTAGAAGTAGAACAGCCAGAAGAAGCTTTTGAAAATGATGGAAGTGAGTGGTATCAGAATAATACCGAATGGAGAAATAGCTCTGAGGAAAATGTGGATGATAATCAGCTCAGTAATTCAGCAAACGAGTGGCCTGAAAACACTTTGGAAAATGGGGATGGAGAAAACACTAATCTGCAAGAATCTCATGAAGCGTGGCAAGAGGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCAGATCATGAAAGTGCTCGAGTTGGTAGAATTCGAGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTTAGGGAACTTCTTAATAGGAGAAGTGTCTCTAATCTCCTTCGCAGCAGTTTCAGGGATAGTCTTGATCAGTTAATACAATCATATGTTCAAAGGCAAGGTAATGCACACATTGACTGGGAATTGCAAGAAACAACCCCCTCATCTGACTTAGCTGAGCAGGACCTTGAGCAGCAGAGTAGGGATCGAATTGTTGATCAGGAGGGTCCTGTTAATAGTCCACTTGATCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTATGGGACCAGCACCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGGAATTGATTGGGAGATTGTTAATGACATGAGAATTGACATGGCTCGATTGCAACAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTGCAGCGCTCCATAAGACAAGAAGTTTCTGCAGCCTTAAATCGCTCTGCTGGTTCATCAGGAATACATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGTCTTTGCTGTGTATGCTGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAGAAAAAAATGCCCTATGTGTCAAGCTCCTGTGGTGGAGGTGATACGTGCTTACTCTATACAATAG | 2589 | 0.4287 | MAIAGLHSVSVLDSPFLRDSHSQSSRRGGEGRRGSTRSSSLLQMWREIEDEQVVNQVQGRPGEVPLEQRREGLIAELSQEDRLDIQERGQGHVLEDAVLGENESETWSQSQSQNESHDDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSNVSRRNSGSRGEWLGETEQERVRIIREWVQMSSQQRSVSSGENREEPSAQIGTQIERVRDGLVVNQNGGQNDHTRRGIRKLCGRQAMLDMLKKAERERQREIEDLLVHRAVSRFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRKQTVSGLREGFFARKENSGCSSQATSNVSDTSSNVDIDFNTNEQMGSSSSHLVPIVYSEQSDPNDKGSDGLRVSGVQSYVQGTTSENLNWQESTAQVGDVLQRFPIESLDCQSSCSAGVERVNNTEQNVEGMPTEYSADEITQQSLRIEDSVHSNNQEFNEVYIEHSELGDINGSENNSSNHDVHMDGNVVDDVNWNESGALEVEQPEEAFENDGSEWYQNNTEWRNSSEENVDDNQLSNSANEWPENTLENGDGENTNLQESHEAWQEDGGFQEAVENWLGGPSDHESARVGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVQRQGNAHIDWELQETTPSSDLAEQDLEQQSRDRIVDQEGPVNSPLDLPSLPIPPPLPLWDQHHHHRDNWSQNDINNQRLGIDWEIVNDMRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIHDCESPEDKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQSRKKCPMCQAPVVEVIRAYSIQ* | 863 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu11g00392 | 862 | MobiDBLite | consensus disorder prediction | 192 | 217 | - | - | |
Lapu11g00392 | 862 | SUPERFAMILY | RING/U-box | 809 | 855 | - | - | |
Lapu11g00392 | 862 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 794 | 860 | IPR013083 | - | |
Lapu11g00392 | 862 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 446 | 862 | - | - | |
Lapu11g00392 | 862 | MobiDBLite | consensus disorder prediction | 538 | 570 | - | - | |
Lapu11g00392 | 862 | MobiDBLite | consensus disorder prediction | 483 | 497 | - | - | |
Lapu11g00392 | 862 | Coils | Coil | 243 | 263 | - | - | |
Lapu11g00392 | 862 | Coils | Coil | 738 | 765 | - | - | |
Lapu11g00392 | 862 | Pfam | Zinc finger, C3HC4 type (RING finger) | 807 | 854 | - | - | |
Lapu11g00392 | 862 | CDD | mRING-HC-C3HC5_NEU1 | 810 | 859 | - | - | |
Lapu11g00392 | 862 | MobiDBLite | consensus disorder prediction | 101 | 136 | - | - | |
Lapu11g00392 | 862 | MobiDBLite | consensus disorder prediction | 192 | 209 | - | - | |
Lapu11g00392 | 862 | MobiDBLite | consensus disorder prediction | 482 | 504 | - | - | |
Lapu11g00392 | 862 | MobiDBLite | consensus disorder prediction | 17 | 39 | - | - | |
Lapu11g00392 | 862 | ProSiteProfiles | Zinc finger RING-type profile. | 810 | 849 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu11g00392 | Lapu-Chr11 | 7056122 | 7061590 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu11g00392 | 810 | 856 | C3H Transcription Factor Family | AT3G06140 | 40.426 | 2.23e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu11g00392 | - | - | gmx:100801329 | 1422.91 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu11g00392 | 11 | 7056122 | 7061590 | Lapu11g00392 | 11 | 7056122 | 7061590 | ECH | |
Lapu5g00507 | 5 | 4551790 | 4558464 | Lapu11g00392 | 11 | 7056122 | 7061590 | PCT |