Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00391 ATGGAATTCTCTTACCGCAGATTGCTGCTCCAGAACGAGGACGTTCCAATCTCCACGTCCATGCCTCCTCTCCCTCACGACGCCAAACACGCCACAAACGCGTCCTCGCCGCCACTGTCAATAGGAAGCCCTCTGCAAGTGTCCATTCGTCCGGTGTTCACTTCCAGCGTTGCCTACGTCTTCCTCATCCTCTTCACCACGTTCTTCTTCATCGGATTCGTGTTTCTCTATTTCCAACAGCACTCCTCCGGCTCCGAGTCCGAGTCCGGCGGCAGCCGTCAACGCGCGGAGTCGTCGGAGTCCAGCGCGGCGAAGACTGTGGCGGTGGTGGCGGAGGAGGCGAGGCAGGGGGAGTGCAGTATATGTCTGGAGGAGGTGGGAGCGGGAGAGGCAGTGAAGATGATCCCGTACTGCAGGCACGTGTTCCACGCGGATTGCATTGACAGGTGGCTGGAGAAGCAGGTGACATGCCCTGTGTGCCGGTGCTGCTGCGAGAGGTGTGGAGAGGTGGAGTCGGTGAGAGGAGAAGGAGAAGATGGAGAAGTAGTTTCCGTAACAAACTTGGATTAG 570 0.5825 MEFSYRRLLLQNEDVPISTSMPPLPHDAKHATNASSPPLSIGSPLQVSIRPVFTSSVAYVFLILFTTFFFIGFVFLYFQQHSSGSESESGGSRQRAESSESSAAKTVAVVAEEARQGECSICLEEVGAGEAVKMIPYCRHVFHADCIDRWLEKQVTCPVCRCCCERCGEVESVRGEGEDGEVVSVTNLD* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00391 189 SUPERFAMILY RING/U-box 118 165 - -
Lapu11g00391 189 Pfam Ring finger domain 118 161 IPR001841 -
Lapu11g00391 189 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Lapu11g00391 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 166 IPR013083 -
Lapu11g00391 189 SMART ring_2 119 160 IPR001841 -
Lapu11g00391 189 PANTHER RING FINGER DOMAIN-CONTAINING 30 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00391 Lapu-Chr11 7050562 7053120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00391 53 182 Rapid Response to Elicitors AT3G05200 36.242 2.47e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00391 - - var:108339852 247.669