Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00385 ATGTCTCGTCGCGGTGGCTCTAACCAATCCGATTTCAACCGTCCGCCGCAGTCCTCGGCTCCTCCTCCCGCTGCCAGAGGTCGTGGTCGTGGTCGCGGCCGCGGCCGCGGTGGAAATTCTGCTCCGGCTCAAACATCATACTCTCCTTCTCCTGCGCACCCTTCATCCCCTGCTTCTCCGTCTCCGTCCACTGCCGCTGCTCCCCGCGCTGTGGCGACTGTCCCTATATCGGCGGTGCAAGTTCCATCCCGCTCTCCGCCTGTTCAAGCATCACCGGATCCAGTTCCTGGATCTGCTGTTGAATCTCTTACTTCAACAATCGAGAAGCAACTGACATTGGCGCCGTCGGCACCGTCGTCATCGAAGGCAGTGAGATTCCCGGACCGGCCGGGAATAGGAACAGTCGGGAGGAAGATCCAAGTACGCGCAAATCATTTTCAAGTTCAAGTCAAGCAGCACGATTTCTATCACTACGATGTGGCGATCACTCCAGAGATTCCTTCGAAGAAGGTTTCCAGAACTGTTATCGGCTTGCTGGTCCAAGCACACCGTGAATCGATTCTGGGAAATCGCGTGCCGGCTTACGATGGACGAAAGAGTCTTTTTACCGCTGGACCCTTGCCTTTTGAGTCTAAGGATTTTAAGGTTAAGTTGGGGGACGATGATGAACCAGGGTCGTCTTCTTCTGCTACTCCTACTCCTGCTAGGAAAAAGCGTGAACGCGAGTTTAGGGTCACAATCAGATTTGCTTCGAAGACTGACCTTCATCACCTATTTCAGTTTCTCAGTCGCCGTCAGTTGGACTGTCCACAGGAAACTATTCAGGCTCTTGATGTTGTTCTGCGGGCGACACCATCTGAAAAGTTTGATGTGGTTGGGAGATCCTTTTATTCTCCTGATTTGGGACCAAGAGGACCGTTAGGTGGCGGGACTGAATATTGGCGGGGGTATTACCAGAGTCTTCGCCCGACTCAGATGGGCCTGTCTCTTAATATTGATGTGTCAGCAAGGGCATTTTATGAGGCTATTGATGTTCTTGACTTCATTTCGAAGCATTTCAGACTCGATCTTCGTAGGCCTTTGCATGATCAGGATCGACTTAAGATTAAGAAAGCTTTGAGAGGAGTCAAGGTACAAGTTAATCATGGACCGAATATTAGACGGTACAAAGTTACTGGAGTGACAAGAGATCCCCTCAGAGCCTTAATGTTTACACTTGATGACAACAGAACGAAAAGCTCCGTTGTTCAGTATTTCCAAGACAAATATAATATTGCGTTGCAGTTTACACAGCTGCCCGCTCTTCAAGCTGGTAGCGACACTAAGCCAATTTTTTTGCCTATGGAGCTTTGTCAAATTGTAGCTGGACAGAGATATACCAAGAAATTGAATGAGGATCAAGTAACTGCTCTCTTAAGGGCAACATGTCAGCGTCCTCGGGATAGGGAAAACTCTATCCGACAGGTTGTGAGGCAGAGCAATTTCAGTGCGGACAGATTTGCGCGGCAATTTGAAATTCGAGTCAGGGACGATCCAGCAGTGTTTGAAGCTCGGGTTTTACCTCCCCCTATGCTTAAATACCATGGATCGGGTGGTGAGTCACAGGTTCAACCAAAGATGGGACAGTGGAATATGATTGATAAGAAAATGATTACTGGTGGTACTGTTGAACATTGGACTTGCCTCAACCTATCTGGAAAAATACACAGAGATCTGCCATATGATTTTTGTCACCACTTGGTTCAAATGTGTAATAGCAAGGGAATGCGATTTAAGGAAAGTCCTTTAGTGCCTATATCATCTTCAAGTGGTCAAATAGAAAATGCTCTTATGAACGTGCATAAGCAGTGTATGAAGGGGGGAGGAAGGCTCCAGTTGTTGATCATAATTTTACCTGATTTTAACAAGGATGCGTATGGGAAAATAAAGCGCATCTGTGAAACTGAATTAGGAATAGTAACTCAGTGTTGTCGACCTAAGAATCTGATGAAATTTAACAAGCAATATCTAGAAAATATGGCCCTGAAGATAAATGTGAAGGTTGGTGGTACGAATACGATATTGAATGATGCATTCGTGAAGAAAATACCTCATGTGTCGGATTTAGCAACGATAGTCCTTGGTGCGGATGTAACACATCCACAACCAGGGGAGGACTCTAGTCCTTCTATTGCTGCAGTAGTGGCATCCATGGATTGGCCTTACGTAACAAGGTACAAAGGCATTGCTTCTTCACAGAAACACCGGGAAGAAATTATTCAGGATCTTTTTATTACACGTCCACGAGAGGTGTCTTCAGGAATTATAAGGGATTTGTTTCGTGCTTTCCGGCGTTCAACAGGTCAGAAGCCCCAGCGGATTATATTCTATAGAGATGGTGTGAGCGAGGGACAATTCAATCAAGTGTTACTTTATGAGGTGGATGCCATAAGAAGGGCTTGTGTCTCGCTAGAACCAGAGTATTTACCTCCGATTACTTTTGTGGTGGTCCAGAAAAGGCATCACACGCGGTTGTTCCCTGCGGAGCACGGAGGTCGTGATAGTACAGATAGAAGTGGAAATATAGTGCCAGGGACTGTTGTTGACACAACCATATGTCATCCTCGGGAGTTTGATTTTTATCTGAACAGCCACGCTGGAATTCAAGGAACCAGCCGACCAACTCATTATCATGTATTGTTCGATGAAAATAAATTTACTGCTGATGAGTTGCAAATTTTTACAAATAATTTGTGTTATACGTATGCACGGTGTACTCGATCAGTGTCAATAGTTCCTCCCGCATATTATGCCCATTTGGCTGCTTTCCGTGCTCGTTATTACATGGAAAGTGATTCTTCTGATTCTGGTTCTGCAACTGGAAGCAGGGGTGGTGGCGTCAACTTTGAGGTGAAATTGCCCTCAGTCAAGGATAATGTCGCAGACGTTATGTTTTTCTGTTGA 2943 0.4618 MSRRGGSNQSDFNRPPQSSAPPPAARGRGRGRGRGRGGNSAPAQTSYSPSPAHPSSPASPSPSTAAAPRAVATVPISAVQVPSRSPPVQASPDPVPGSAVESLTSTIEKQLTLAPSAPSSSKAVRFPDRPGIGTVGRKIQVRANHFQVQVKQHDFYHYDVAITPEIPSKKVSRTVIGLLVQAHRESILGNRVPAYDGRKSLFTAGPLPFESKDFKVKLGDDDEPGSSSSATPTPARKKREREFRVTIRFASKTDLHHLFQFLSRRQLDCPQETIQALDVVLRATPSEKFDVVGRSFYSPDLGPRGPLGGGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEAIDVLDFISKHFRLDLRRPLHDQDRLKIKKALRGVKVQVNHGPNIRRYKVTGVTRDPLRALMFTLDDNRTKSSVVQYFQDKYNIALQFTQLPALQAGSDTKPIFLPMELCQIVAGQRYTKKLNEDQVTALLRATCQRPRDRENSIRQVVRQSNFSADRFARQFEIRVRDDPAVFEARVLPPPMLKYHGSGGESQVQPKMGQWNMIDKKMITGGTVEHWTCLNLSGKIHRDLPYDFCHHLVQMCNSKGMRFKESPLVPISSSSGQIENALMNVHKQCMKGGGRLQLLIIILPDFNKDAYGKIKRICETELGIVTQCCRPKNLMKFNKQYLENMALKINVKVGGTNTILNDAFVKKIPHVSDLATIVLGADVTHPQPGEDSSPSIAAVVASMDWPYVTRYKGIASSQKHREEIIQDLFITRPREVSSGIIRDLFRAFRRSTGQKPQRIIFYRDGVSEGQFNQVLLYEVDAIRRACVSLEPEYLPPITFVVVQKRHHTRLFPAEHGGRDSTDRSGNIVPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENKFTADELQIFTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMESDSSDSGSATGSRGGGVNFEVKLPSVKDNVADVMFFC* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00385 980 Pfam Piwi domain 627 942 IPR003165 GO:0003676
Lapu11g00385 980 Pfam N-terminal domain of argonaute 137 281 IPR032474 -
Lapu11g00385 980 CDD PAZ_argonaute_like 342 454 - -
Lapu11g00385 980 MobiDBLite consensus disorder prediction 1 15 - -
Lapu11g00385 980 Pfam Argonaute linker 1 domain 292 341 IPR014811 -
Lapu11g00385 980 Pfam Mid domain of argonaute 538 615 IPR032473 -
Lapu11g00385 980 FunFam protein argonaute 10-like 695 980 - -
Lapu11g00385 980 MobiDBLite consensus disorder prediction 1 103 - -
Lapu11g00385 980 ProSiteProfiles Piwi domain profile. 626 943 IPR003165 GO:0003676
Lapu11g00385 980 Pfam Argonaute linker 2 domain 481 527 IPR032472 -
Lapu11g00385 980 MobiDBLite consensus disorder prediction 213 240 - -
Lapu11g00385 980 Gene3D - 519 690 - -
Lapu11g00385 980 ProSiteProfiles PAZ domain profile. 343 455 IPR003100 GO:0005515
Lapu11g00385 980 SUPERFAMILY PAZ domain 338 495 IPR036085 GO:0005515
Lapu11g00385 980 CDD Piwi_ago-like 500 942 IPR045246 -
Lapu11g00385 980 Gene3D paz domain 337 459 - -
Lapu11g00385 980 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 116 944 - -
Lapu11g00385 980 SMART PAZ_2_a_3 343 471 IPR003100 GO:0005515
Lapu11g00385 980 FunFam Argonaute 10 519 689 - -
Lapu11g00385 980 SUPERFAMILY Ribonuclease H-like 610 943 IPR012337 -
Lapu11g00385 980 SMART Piwi_a_2 626 943 IPR003165 GO:0003676
Lapu11g00385 980 Gene3D - 696 980 IPR036397 GO:0003676
Lapu11g00385 980 SMART DUF1785_2 290 342 IPR014811 -
Lapu11g00385 980 Pfam PAZ domain 364 471 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00385 Lapu-Chr11 6942356 6948491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00385 89 980 Eukaryotic Initiation Factors Gene Family AT1G48410 56.911 0.0 1040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00385 K11593 - gmx:100799033 1360.51