LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu11g00382	ATGGAGAGGAACGAAAATTACAGTTCAGAGGAGGAATGCATGGAGGATTATAGGCGTGGAGGGTACCATGCCGTTCGAATCGGTGACGCTTTCAATAATGGCCGCTACATCGTGCAGTCCAAACTCGGTTGGGGCCATTTTTCCACCGTGTGGCTCGCTTGGGACACTCTCAATTCGCGTTTTGTAGCCCTTAAAATTCAGAAGAGTGCGCAACATTACACTGAATCTGCAATGGATGAAATAAAGGTTCTCAAACAAATAGCTGAGGGGGACCTGGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTTAAGCATTCGGGGCCTAATGGACTGCATGTGTGTATGGTTTTTGAATTCCTGGGTGACAATCTTCTCACCCTTATTAAATATACTGACTATCGTGGGGTTCCTCTCAACATGGTTAAAGAAATCTGTTTTCATATTTTGGTGGGCTTAGATTACTTGCATCGTGAGCTTTCTGTCATACACACCGATTTAAAGCCTGAAAATGTGTTGCTTCTGTCACTGATAAATCCATCTAAAGATCCTAGGAAATCAGGTGCTTCACTCATCCTTCCGAATTCCAAGGATAAGGCTGCGTCTAATAATGGGACTCACCAAGACTATAAAATTTTGAATGGAGATCCACTGAAGGACCAGAAAAAGAAAATGAGGAGGAAGGCTAAGGTAGCTCAAGGCTTTGTTGGGAAGGAAACTTCGGAGGAAGCTGAGGATTGTAAAGGACCCGAGCAAGAAGACTGCAGCAATGATGTAAAATCAAGGGTAGAATCTGTTGAAGATAAACCTGATAGTTCTTTGAGTAAAGATGAATCAACAAAGACTTCTGAAAAGGATGTTTTACAAGGAAGTCATAGTCACAGGAGCAGCAGCCGTTCCATGAAAAAGCAGTTGCTGGCAGCTGTTGATCTTAGGTGCAAGCTGGTTGATTTTGGTAGTGCTTGTTGGACTTACAAACAATTCACAAATGATATTCAGACAAGGCAATATAGGTGTCCCGAGGTTCTTCTTGGATCCAAATACTCAACCCCAGCAGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGAGATGAGACGTTTGTTTTGCAGGACCATCTGGCATTGATGATGGAGCTTGTTGGGAAGATGCCTCCGAAGATTGCACTAGGTGGCCGCTATTCTCGAGAATTTTTCAATAGACATGGTGACTTGAGGCACATCAGCAATTTGAGATTCTGGCCAATGGATAAGGTGCTGATGGACAAGTATAATTTCAGTGAGCAAGACACAAAGGACATGGTTGACTTCCTTGTTCCAATACTTGATTTTGTCCCAGAAAAGAGACCAACAGCTGCTCAGTGCCTTATTCATCCATGGATGAGTGCAGGTCCTCGTACTCTTCAGCCCTCAATAACTACCGCTCAACCTGATGTCGTCAATGAGGAATTGTCTGAAAGAAGGAAGAGGGAAGCAGCTGAGAAGGAGGCAGTGGAAATTGGTTTGAGGAATATAGCCATTAAAGGAACTTCTGAGCCTCTCAAAGACTCCCAACCTCTAAAATCATCCAAATAG	1629	0.4322	MERNENYSSEEECMEDYRRGGYHAVRIGDAFNNGRYIVQSKLGWGHFSTVWLAWDTLNSRFVALKIQKSAQHYTESAMDEIKVLKQIAEGDLDDKKCVVKLLDHFKHSGPNGLHVCMVFEFLGDNLLTLIKYTDYRGVPLNMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSLINPSKDPRKSGASLILPNSKDKAASNNGTHQDYKILNGDPLKDQKKKMRRKAKVAQGFVGKETSEEAEDCKGPEQEDCSNDVKSRVESVEDKPDSSLSKDESTKTSEKDVLQGSHSHRSSSRSMKKQLLAAVDLRCKLVDFGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDETFVLQDHLALMMELVGKMPPKIALGGRYSREFFNRHGDLRHISNLRFWPMDKVLMDKYNFSEQDTKDMVDFLVPILDFVPEKRPTAAQCLIHPWMSAGPRTLQPSITTAQPDVVNEELSERRKREAAEKEAVEIGLRNIAIKGTSEPLKDSQPLKSSK*	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu11g00382	542	SMART	serkin_6	36	479	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu11g00382	542	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	163	175	IPR008271	GO:0004672\|GO:0006468
	Lapu11g00382	542	SUPERFAMILY	Protein kinase-like (PK-like)	31	490	IPR011009	-
	Lapu11g00382	542	MobiDBLite	consensus disorder prediction	240	293	-	-
	Lapu11g00382	542	Pfam	Protein kinase domain	37	175	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu11g00382	542	Pfam	Protein kinase domain	308	479	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu11g00382	542	MobiDBLite	consensus disorder prediction	197	211	-	-
	Lapu11g00382	542	Gene3D	Phosphorylase Kinase; domain 1	12	118	-	-
	Lapu11g00382	542	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	7	500	-	-
	Lapu11g00382	542	CDD	STKc_SRPK	25	479	-	-
	Lapu11g00382	542	ProSitePatterns	Protein kinases ATP-binding region signature.	42	65	IPR017441	GO:0005524
	Lapu11g00382	542	FunFam	Serine/threonine-protein kinase SRPK-like protein	304	479	-	-
	Lapu11g00382	542	MobiDBLite	consensus disorder prediction	184	300	-	-
	Lapu11g00382	542	FunFam	CMGC/SRPK protein kinase	22	121	-	-
	Lapu11g00382	542	ProSiteProfiles	Protein kinase domain profile.	36	479	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu11g00382	542	Gene3D	Transferase(Phosphotransferase) domain 1	119	480	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu11g00382	Lapu-Chr11	6913133	6917684	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu11g00382	6	528	EF-hand Containing Proteins	AT5G22840	62.900	0.0	680

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Lapu11g00382		Pkinase	1.6e-19	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu11g00382	K08832		-	gmx:100790060	941.028