Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00377 ATGGAGACGCGGGTAGCGAGGCCGAGGGGACGTCCGAGGAAGAGGAGAAGAAATGATGAGGAGAATGAGAACGAAGCAAAGAAGCATGCATCCATGGGAGCGCCAGCCGTGGCTCTAGTCGGAAGGTTCGTTTTGAAAGAATTTTCTGGGAACGGTGTGTTTCTGGGAAAGGTAGTGTACTACGAAACCGGTCTTTATAGAATTTGTTACGAGGATGGCGATTCGGAAGACCTCGACAGTGGTGAGGTCCGTTCTATAATCGTTAAAGAGGGCGAAATTAATGGTGATTTAGAGCGGAGGAAGGAGATGTTAGAAAAATTGGTGTCGAATCATCGAGGAAAGATTGGAAAGATCGGAAATGGTTCACGGAAGGGACCAGTTGAATCCATTAAGGAGGAATCTAGGGATGAATTGAGTGAATTGAAAGATGGTGGGCTAGTGATTGGAAAAGATGAGGAAGAAGATGATGAGGAGGATGATGGGGATGTCAATTCTTCCAGTGATTCTGGCACTGGTCTGGGAACGGATTCTGGTGCCGAGGCTGAGACCCTGCCGCCGCCACCTGAGTTGCCGGTGTCATCAGGTACCATTGGGGTTCCTGAACAATGTGTCTCACTGGTGTTCTCTGTGTATGGATTTCTGAGGTCCTTTAGTATAAGGTTGTTCCTACAGCCGTTTACTCTGGACGAATTCGTCGGTGCCCTGAATTACCAGGTCACAAATTCACTATTTGACGCAATTCATCTGTCGCTTATGAGAGTTTTGAGGCGGCACCTTGAATTCCTCTCATCAGAGGGCTCAGAGCGAGCTTCAAGATGCCTAAGGTGCAATGAATGGAGCTTGCTGGATCCAGTGACATGGCCAGCCTTTCTTATACAATATTTGGTAGTCAGTGGACACACAAATGCGCACGAGTGGAGAGCATTTTACGAAGAGGTGTCCACTGTAGAATATTATGTACTGCCAGTCAGTAGGAAGTTGATGGTATTGCAAATTCTCTGTGATGATGTCTTGGAATCTGAGGATATCATAAATGAAATGAACATTCGGAGAGAATCTGAGGTTGGGATAGATTATGATGAAGATATCCTTCCTACCGAAGTTGGGCTCAGAAGAGTCGAGCCAAGGCACACCTTTACATCAGCGTGTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAACCTTATTTCATATTCCAGAGATACAGGAAGTACTGAAGACGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATCGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATAAATATGTCGGGGCCAACCATTGCAAAGGGAACATCACTTCGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGAACTTGCGAACATCTACTTGTGCTGAATATTGGCAGTGCTGAATGTTGTCTTAGATATTACAATCAGAATGACATTCCCAAGGTTCTCCAAGTGCTTTATGAATCCATGCAGCACAGACCAATATACCATGATATTTGCATGGCAGTGCTACAATATTGGAGTGTTCCTGAGAGTCTGTTGTTTCATTCTGTTTCAAGTGGGGCAAATGTGAACTCAGCAAATAGAAAGGAAGAGACAAAGCCCTCTACTTTTTTACTTCCTCCTTTGGGTGAAGGCAATTTGGTGAAGGAAGAGTATCCTTTAACCTCTGTCAATACAACTTGCTTTGACAATATGGTGCCATCTCTTGATGCTTCATCAGTTTCCACTCCGAGTCCTGCTCTTCAGTGTAATGGCAATGGTAGCAGTGGTGAGTGCCCTGTTGTGACTACAAAGCTTCTCGAGGACACTAGGATGGAGTCCATCCTCTCAGCTGATTCTGCTTCTGTTTCTGTTAGTTGTCATTCCAACATGAGCCATGGAAATTTTGATGATAGGCCAACAGTGGTAGATCCTGGCAAGTGCTCTTCAGAAAATAGTCAATTTAGTTATTATGGCCATGCAAATGAGACAGGGTTGCCTATAAATATTTCTTTCCAGACCAAAGAAAGCACTCAAGCCAGTTTTGAAAAGTGTGAACGCAATGTAACCAATGGTTTTGCATACATGGGTTTCTCCTATAAGCCATCGTCGTACATGAATTACTATATACATGGTGAATTTGCTGCATCAGCGGCTGCTAAATTTGCCCTTCTTTGCTCCGAGGAATCTAGATCAGAGGGTCACGTGTCAGACAATCAGAGGAAATTGGCGTCTGGAAACACTTACTTGCAAGCAAAAGCGTTCTCATTAACTGCTTCACGTTTCTTTTGGCCAAATTCTGAGAAGAAGCCTGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCATTTCTTGTAGAGGCCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAGAGTGCTACAAAAGTGCTTGCTGGTTTTTCTCCTATAAGAAGTGGGGAGGGAGTACTCCCTAGTATTGCAACCTACATTATATACATGGAGGAATGCTTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTGCAATGTACAGAAGGCAATGGCGTAAGCGAGTGGAACAGGCCACAACATTTAGTGCTATCAAGACACTTTTACTTGAACTTGAGGAGAATATTCGGACAATTTCTTTCTGTGGGGACTGGGTTAAGCTGGTGGATGACTGGTTGGTTGAATTTTCTATGGTGCAAAGTGCGACATCTACTCTTGGAACAGCACAGAAGCGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTATTGAAGAAGCTACAGCTGATGGTTGCCCTGAAAACTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCCATCTTGCCAAAATCCATGGTCAGAAAAGCAGCGAGACAAGGTGGTTCAAGAAAAATTTCTTCCATTTTTTATGCTGATGGCATTGAAATCCCTAAAAGAAGTAGACAACTTGTTTGGAGAGCTGCTGTACAGATGAGTAGGAATGCATCGCAGCTGGGACTTCAGGTCAGATATCTGGATTTTTATCTCAGATGGAATGATCTGATTCGTCCCGAGCAGAATATCCAGGATGGGAAAGGTCAGGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACACTAAACTGGTAGAGGGGAAAATCTGTTATGGGATTGCTTTTGGGAGTCAAAAACATCTTCCTTCTCGGGTGATGAAAAATGTTATTGAAATAGAACAAGATCCAGAAGGAAAGGAAAAGTATTGGTTTTATGAAGCACGAATTCCTCTATATTTGGTGAAAGAGTATGAAGAAGGCAAAGGAAACATGCAATATAATGAAGAGCAGCACTTGAATACTGCATCTGAGTTGTTGCATAGAAAGCGGTTGAAAACTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATCGGTGTTTTAATTAGGGATGCTACGAAGTGTAATGCATGCCAAGGTTATTGTCACGAGGGTTGCTCCACAAGTTCAACAGTCTCTGCAAATGAAGTTGAGTACTTGACCGTGTGCAAGCAATGTTACCATGCTATGTTACTTGCTCAGAAGGAGAATAGTAATGAATCTCCTACCAGTCCATTACTCCTTCGAGGACGAGAAAATAACTCTGGGACAGTTTTGAAGAGATCAAGGCCTAAAACTCACGATCAAGTACCGAAATCTTCCAAGTCAAAGGCTAATAATCCCATGAATCAAGTTACTTCAATGACGAGTTCGAAAGGAACAAAGGCTAAATATAGTGAACAAGAACCGACTGCTAGGAAAACTGAACATCATCCTCACATGCAACAAGTTGCTTCTGTTGCCACATCAGCTGGAAAACGCCATCGCAAAAATTGTTCTTGGGGTATTATATGGAAAAAGAAAAATAATGAAGACAATGATTTCAGGCTCAGAAATATACTTTTAAAAGGGAGCTCAAACATGCCAGAAGTAGAACCTGTTTGTCACTTGTGTCGGAAGCCATACACGTCTGATCTGATGTATATTTGCTGCGAGACATGCCAAAATTGGTATCATGCTGAAGCCGTTGAGCTTGAAGAATCCAAACTTTCTGGTGTGATGGGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTAATGTGAAACCTGAGAAGCAAGAGGGAAAAAAGTCACGCATAAAAGCAAAGAAAGAACATTCTGGAGCGGATACTGATTCTGGAGCAATCTCCGATATGAGAGAGTTTGAAGCTACCACTCCCGTCTTTCCTGTATATGATGATACTCTCGCCTTTTCTGTGGAGGATCCTACTCCTGTCTTTCCTAATGAGGATCCCACTCCCGTCTTTCCTGCTGAGGATGATCCTCTTCTTTTCTCTCTCTCAAGTGTTGAACTGATGACAGAACCTAAGGTAGATGGGGATATTGAGTGGAACAGTATCTCTGGGCCAGGGCTTCAAAAACTGCCAGTGAGAAGGAATGTTAAGTATGAGGGTGAAGAGGGTGATGATGATGTTTCTTTTGGAGATGTACCTTTGGATGCTGAATTCTCTACCTACGGTGGTGAGGCAGGTAATCTGTCCAATCCTGCAGAGGAATCTGCACCTTCAGAATATGCCTCTCAAAATGTAAATTATGACGATTACATGGATTTTGAACCCCATACCTACTTCTCCGTAACGGAACTGCTGCAGTCAGATGATGGTCAGTTTGAGGGAGTTGATATGTCTGGGGACTTGTCAGGATATATGGAAAATTCTTGCACCGCACTTATTCCTCAATCGTCTGGAGATGTTAGTTTGGTAGATAAATCAGAACCTACATCTTACACCGGCTATAGTTGTATGCAATGTTCACAAATGGAACCAGCCCCTAATCTCCGCTGTGAGATTTGCGGGATATTGATTCACAGCCAATGTTCACCTTGGGTTGAAGTACCATCGCTTGGAAGTTGGAGGTGTGGCCATTGCCGGGAATATGGTAATAACTGA 5178 0.4349 METRVARPRGRPRKRRRNDEENENEAKKHASMGAPAVALVGRFVLKEFSGNGVFLGKVVYYETGLYRICYEDGDSEDLDSGEVRSIIVKEGEINGDLERRKEMLEKLVSNHRGKIGKIGNGSRKGPVESIKEESRDELSELKDGGLVIGKDEEEDDEEDDGDVNSSSDSGTGLGTDSGAEAETLPPPPELPVSSGTIGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFVGALNYQVTNSLFDAIHLSLMRVLRRHLEFLSSEGSERASRCLRCNEWSLLDPVTWPAFLIQYLVVSGHTNAHEWRAFYEEVSTVEYYVLPVSRKLMVLQILCDDVLESEDIINEMNIRRESEVGIDYDEDILPTEVGLRRVEPRHTFTSACEDKEATKFVSASNAVNQPGNLISYSRDTGSTEDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMSGPTIAKGTSLRGAEIFGKDLYGQLFMGTCEHLLVLNIGSAECCLRYYNQNDIPKVLQVLYESMQHRPIYHDICMAVLQYWSVPESLLFHSVSSGANVNSANRKEETKPSTFLLPPLGEGNLVKEEYPLTSVNTTCFDNMVPSLDASSVSTPSPALQCNGNGSSGECPVVTTKLLEDTRMESILSADSASVSVSCHSNMSHGNFDDRPTVVDPGKCSSENSQFSYYGHANETGLPINISFQTKESTQASFEKCERNVTNGFAYMGFSYKPSSYMNYYIHGEFAASAAAKFALLCSEESRSEGHVSDNQRKLASGNTYLQAKAFSLTASRFFWPNSEKKPVEVPRERCGWCISCRGPASSKRGCMLNHAALSATKSATKVLAGFSPIRSGEGVLPSIATYIIYMEECLRGLVVGPFLSAMYRRQWRKRVEQATTFSAIKTLLLELEENIRTISFCGDWVKLVDDWLVEFSMVQSATSTLGTAQKRAPSGRRYKKRSAIEEATADGCPENFVWWRGGKFTKFIFQKAILPKSMVRKAARQGGSRKISSIFYADGIEIPKRSRQLVWRAAVQMSRNASQLGLQVRYLDFYLRWNDLIRPEQNIQDGKGQETEASAFRNANICDTKLVEGKICYGIAFGSQKHLPSRVMKNVIEIEQDPEGKEKYWFYEARIPLYLVKEYEEGKGNMQYNEEQHLNTASELLHRKRLKTICKDIFFYLTCKRDNLDVVSCSVCQIGVLIRDATKCNACQGYCHEGCSTSSTVSANEVEYLTVCKQCYHAMLLAQKENSNESPTSPLLLRGRENNSGTVLKRSRPKTHDQVPKSSKSKANNPMNQVTSMTSSKGTKAKYSEQEPTARKTEHHPHMQQVASVATSAGKRHRKNCSWGIIWKKKNNEDNDFRLRNILLKGSSNMPEVEPVCHLCRKPYTSDLMYICCETCQNWYHAEAVELEESKLSGVMGFKCCKCRRIKSPVCPYSNVKPEKQEGKKSRIKAKKEHSGADTDSGAISDMREFEATTPVFPVYDDTLAFSVEDPTPVFPNEDPTPVFPAEDDPLLFSLSSVELMTEPKVDGDIEWNSISGPGLQKLPVRRNVKYEGEEGDDDVSFGDVPLDAEFSTYGGEAGNLSNPAEESAPSEYASQNVNYDDYMDFEPHTYFSVTELLQSDDGQFEGVDMSGDLSGYMENSCTALIPQSSGDVSLVDKSEPTSYTGYSCMQCSQMEPAPNLRCEICGILIHSQCSPWVEVPSLGSWRCGHCREYGNN* 1726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00377 1725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1378 1438 IPR013083 -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 150 164 - -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1444 1472 - -
Lapu11g00377 1725 Pfam DDT domain 202 258 IPR018501 -
Lapu11g00377 1725 ProSiteProfiles DDT domain profile. 201 261 IPR018501 -
Lapu11g00377 1725 SMART PHD_3 1676 1720 IPR001965 -
Lapu11g00377 1725 SMART PHD_3 1384 1432 IPR001965 -
Lapu11g00377 1725 SMART PHD_3 425 468 IPR001965 -
Lapu11g00377 1725 SMART PHD_3 1196 1244 IPR001965 -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1316 1330 - -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1255 1332 - -
Lapu11g00377 1725 Pfam PHD-finger 426 468 IPR019787 -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 14 28 - -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 115 194 - -
Lapu11g00377 1725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 476 IPR013083 -
Lapu11g00377 1725 ProSitePatterns Zinc finger PHD-type signature. 426 467 IPR019786 -
Lapu11g00377 1725 SMART testlast3 201 261 IPR018501 -
Lapu11g00377 1725 CDD Tudor_AtPTM-like 40 87 IPR047365 -
Lapu11g00377 1725 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 304 348 IPR028942 -
Lapu11g00377 1725 SUPERFAMILY FYVE/PHD zinc finger 1378 1438 IPR011011 -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 126 149 - -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1273 1289 - -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1290 1315 - -
Lapu11g00377 1725 SUPERFAMILY FYVE/PHD zinc finger 397 469 IPR011011 -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1581 1600 - -
Lapu11g00377 1725 PANTHER PHD FINGER FAMILY PROTEIN 35 1584 - -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1446 1467 - -
Lapu11g00377 1725 CDD PHD2_CHD_II 426 467 - -
Lapu11g00377 1725 ProSiteProfiles Zinc finger PHD-type profile. 423 470 IPR019787 -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1255 1272 - -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1584 1600 - -
Lapu11g00377 1725 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1203 1234 IPR017896 -
Lapu11g00377 1725 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00377 Lapu-Chr11 6861153 6872136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00377 291 559 EF-hand Containing Proteins AT5G22760 50.362 7.33e-73 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lapu11g00377 DDT 7.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00377 - - gmx:100796377 2392.46