Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00376 ATGGAGCAACAGAACCTTTCAGACACTGATCAGTTTTTGACTCTGGGCCCCACATCGGATGAGTCACAGAGTCCTAAGGAAGCAGTGTCGCATGTCAACGCTGCCGACAATAACAACAACAATGTTGTTAGCGCAGTTAACTTTGGAACTGGTCCTGGTTTAAGTTCAGGTTTGGAGCCTGTTGTGACAGTTGCAAACTCCGAAGCTGTAGGTTCGGGATTGGTGGTGAAGAGAGGAAGGGGCAGGCCTCGGAAGCAAGAGGCTGTCCGGAGCATGGCGTCTCCATTGGCGGGGATGGTGCCGCCGCCACCAGGATTTTCTGATCAGACCAGGAGAGGCAGGGGACGCCCACGTGGCTCAGGAAAACTGCAAGTTATGACTTCCATTGGTGGGTTTATGGCAGAAACAGCAGGGGGAAGCTTCAATCCTCATGTGCTGACTGTGCAAATTGGAGAGAATCTGGTAAGCACCATAATGTCATTTTTTGAGAAAAGCCCGCTATCAGTTTGCATACTTTCTGCTACTGGTGCTATTTCAAATGTTACCATTCGCGAACATGCTGGTTCGAATCATATCATGAGATTTGAGGGTACCTTTGAGATATTGTCTTTATCAGGAGCTTGTACCTTGGTTTATGGTATAAATGGTCCAGTTCGTACAAGTGGATCATTGAGCATTTCAATGGCTAGATCTGATGGGAATGTTTTGGGGGGAGTCCTTGAGAGTGCATTGGTAGCAGTTTGCCCTATTCAGCTTGTTATGGCCACTTTCAAGCAAAATACCAGTAGTCAATTCAAGAGAAAGCAATTTTTTGAGTTTTCTAATGTCCCCCTTATGCTGGAAAGTCCAGATCCAGAAAGGGGTAAACTGAAAGTTCCAAAGTGGACAGAAGGTGAGAAGAGTTGTTCCTCACCAGCACCAACAGGACTTGAACCAACAACAATAACTAATTGTGTAGCAGAAAATGTGTTTCCTGGCACACCTAATGGAGGATCAGATAGGGTTATTACTCCACAGAATGAGCACTCTGCATGTGGTATTGGTGCTGATGATATGGACAACCCACAGTCCGCATCAGATGATTCAAATCAGAAGACTTCTGCAGATGTGAATGCAAATGTTATGGGGTTATAA 1134 0.4586 MEQQNLSDTDQFLTLGPTSDESQSPKEAVSHVNAADNNNNNVVSAVNFGTGPGLSSGLEPVVTVANSEAVGSGLVVKRGRGRPRKQEAVRSMASPLAGMVPPPPGFSDQTRRGRGRPRGSGKLQVMTSIGGFMAETAGGSFNPHVLTVQIGENLVSTIMSFFEKSPLSVCILSATGAISNVTIREHAGSNHIMRFEGTFEILSLSGACTLVYGINGPVRTSGSLSISMARSDGNVLGGVLESALVAVCPIQLVMATFKQNTSSQFKRKQFFEFSNVPLMLESPDPERGKLKVPKWTEGEKSCSSPAPTGLEPTTITNCVAENVFPGTPNGGSDRVITPQNEHSACGIGADDMDNPQSASDDSNQKTSADVNANVMGL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00376 377 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 258 IPR005175 -
Lapu11g00376 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 333 IPR039605 GO:0003680
Lapu11g00376 377 PRINTS AT-hook-like domain signature 77 87 IPR017956 GO:0003677
Lapu11g00376 377 PRINTS AT-hook-like domain signature 109 120 IPR017956 GO:0003677
Lapu11g00376 377 ProSiteProfiles PPC domain profile profile. 138 286 IPR005175 -
Lapu11g00376 377 MobiDBLite consensus disorder prediction 355 371 - -
Lapu11g00376 377 MobiDBLite consensus disorder prediction 329 377 - -
Lapu11g00376 377 CDD DUF296 142 257 IPR005175 -
Lapu11g00376 377 Gene3D - 143 274 - -
Lapu11g00376 377 MobiDBLite consensus disorder prediction 1 30 - -
Lapu11g00376 377 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 264 - -
Lapu11g00376 377 MobiDBLite consensus disorder prediction 95 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00376 Lapu-Chr11 6840373 6844182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00376 76 257 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 40.000 5.66e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00376 - - gsj:114378162 412.535