Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00373 ATGGACTCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAAACTGTGAAGGTTGATCCAATGGATCCAGTGAGTGCGTACATACACATTTCTCAGGTTGCTCTTGGGGAGGTGAAAAAGGAAAAGGCAAATGAACCTGTGGTTCTGTACTTGAAAGTTGGTGACAAGAAGATTGTTTTGGGAACCCTTAAAAGGGATGATATCCCTCACCTTTCGTTGGATTTGGTTCTCGACTCCGAGTCAGAGCTTTCCCACTCTTCGAAAAGTGCCAGTGTCTTTTTTTGTGGATACAAAGTATTAACCGATGAGGGTAACATTTCCGACTTTTCTGATAGTGAAGAAGAGGAGGAGAATCTTGTCTTGAATGGTCAAGATAATGGGATTACTGCAATAAAAGTTGAAGGTGCAAAGGTTACCAAGCCCTCCAAACCTGCTCCCGTGGGAAAACAAGTTAAGACTGTTGATCCAAAGAAAGATGAAGACGATGATTCTGATTCTGACGAATCTGATGATGAGCTTGCTGGCGATGATGAATCTGGAACTTCTGATGAGATGGACGATGATAGCGGCAGTGATGAGGAGAGTGAGAGTGATGAAGAGACCCCTGTGAAGAAGGTGGAACAGGGCAAGAAGAGACCAAATGAGTCTGCATCAAAAACTCCAGTTTCTTCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGATGGTAAGAAAAATGTTCACGTAGCAACTCCCTATCCTACGAAGAAAGGTGGAAAGACTCCAAAAAGTGCTACAAAAGGCCAGTCTCCCAGTTCTGCTGGACAACTATCTTGCGGAAGTTGTAAAAAGTCTTTCTCCAACGAAGCTGGTTTGCAACAGCATAAGAAGGCTAAGCATGGTGGTCAGTGA 900 0.4389 MDSPMEFWGVEVKVGQTVKVDPMDPVSAYIHISQVALGEVKKEKANEPVVLYLKVGDKKIVLGTLKRDDIPHLSLDLVLDSESELSHSSKSASVFFCGYKVLTDEGNISDFSDSEEEEENLVLNGQDNGITAIKVEGAKVTKPSKPAPVGKQVKTVDPKKDEDDDSDSDESDDELAGDDESGTSDEMDDDSGSDEESESDEETPVKKVEQGKKRPNESASKTPVSSKKAKTATPEKTDGKKNVHVATPYPTKKGGKTPKSATKGQSPSSAGQLSCGSCKKSFSNEAGLQQHKKAKHGGQ* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00373 299 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Lapu11g00373 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 299 IPR013087 -
Lapu11g00373 299 Gene3D Nucleoplasmin core domain 2 107 - -
Lapu11g00373 299 MobiDBLite consensus disorder prediction 200 216 - -
Lapu11g00373 299 MobiDBLite consensus disorder prediction 162 199 - -
Lapu11g00373 299 MobiDBLite consensus disorder prediction 137 299 - -
Lapu11g00373 299 MobiDBLite consensus disorder prediction 258 288 - -
Lapu11g00373 299 FunFam Histone deacetylase HDT1 5 105 - -
Lapu11g00373 299 ProSitePatterns Zinc finger C2H2 type domain signature. 275 296 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00373 Lapu-Chr11 6792177 6795579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00373 5 296 C2H2 Transcription Factor Family AT5G03740 37.742 7.63e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g00373 NPL 4.1e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00373 - - gmx:547649 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00525 5 4747798 4751380 Lapu11g00373 11 6792177 6795579 PCT