Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00353 ATGAACGTCATTAATTTACGATTTTGCCACTCTTTCCAACTCCTCCTTTCACCAAATCTCCTCTTCAGTGTTCCTTCTTCGCAAACTCGAAACTTTCCTCTGAGAAACCCCACAACCCCTCTTGCCATTTCCTGCAAAAATCGTTTCTTTTCTCCAATTCGTGCGTCCATGGCCTCGTCAGCCTCCGTCACGGACAACGAAGCAAAGCCATTTTCCGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCAGCTGAAGGAGTCTTCACTGACTTAGTAAACAAAAAGAGCCTCAATTCGGTGTTCAAAATTGATTCTGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGACCCGAGAATGAGGGCAGCCTCAAAGAGACGTGGGATTCAGATAACTTCTATTTCAAGGCCTATCAAACCCTCTGATTTCACTGACTTTGACCTCATTCTTGCCATGGACAAGCAGAACAGAGCGGACATATTGGAGGCCTTCAATAGATGGAAAGGAAAACATTCCTTACCGGATGATGCACATAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAAGTGAAGTCCCGGATCCTTATTATGGTGGTGCGCAAGGGTTTGAGAAGGTGTTGGATTTGCTAGAAGATGCTTGCGGATCATTACTGGAAACCATTTTGGCTGAAAATAAACATGTACAAGAATCCTAG 720 0.4486 MNVINLRFCHSFQLLLSPNLLFSVPSSQTRNFPLRNPTTPLAISCKNRFFSPIRASMASSASVTDNEAKPFSVLFVCLGNICRSPAAEGVFTDLVNKKSLNSVFKIDSAGTINYHEGNEADPRMRAASKRRGIQITSISRPIKPSDFTDFDLILAMDKQNRADILEAFNRWKGKHSLPDDAHKKVKLMCSYCKKHDESEVPDPYYGGAQGFEKVLDLLEDACGSLLETILAENKHVQES* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00353 239 PRINTS LMW phosphotyrosine protein phosphatase signature 200 215 IPR017867 GO:0004725|GO:0006470
Lapu11g00353 239 PRINTS LMW phosphotyrosine protein phosphatase signature 116 132 IPR017867 GO:0004725|GO:0006470
Lapu11g00353 239 PRINTS LMW phosphotyrosine protein phosphatase signature 73 90 IPR017867 GO:0004725|GO:0006470
Lapu11g00353 239 Gene3D - 54 234 - -
Lapu11g00353 239 SMART LMWPc_2 71 228 IPR023485 -
Lapu11g00353 239 SUPERFAMILY Phosphotyrosine protein phosphatases I 69 229 IPR036196 -
Lapu11g00353 239 FunFam Low molecular weight protein-tyrosine-phosphatase 70 234 - -
Lapu11g00353 239 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 42 234 - -
Lapu11g00353 239 CDD LMWPTP 72 227 - -
Lapu11g00353 239 Pfam Low molecular weight phosphotyrosine protein phosphatase 73 226 IPR023485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00353 Lapu-Chr11 6606072 6609040 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00353 35 233 Protein tyrosine phosphatase (PTP) family AT3G44620 59.292 3.70e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00353 K25307 - gmx:100797254 395.201