Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00350 ATGAGGGCAGTCTCAAAGAGGCGTGGGATTCAGATAACTTCTATTTCAAGGCCTATCAAGCCCTCTGATTTCACTGACTTTGACCTCATTCTTGCCATGGACAAGCAGAACAGAGCGGACATATTGGAGGCCTTCAATAGATGGAAAGGAAAACATTCCTTACCGGATGATGCACATAAAAAGGTTGGTGCAAGGTCTTGCTCTTCTTCGGGGCTTTTGTTTGGTCTAACGAAACGAGGGTTGTGA 246 0.4553 MRAVSKRRGIQITSISRPIKPSDFTDFDLILAMDKQNRADILEAFNRWKGKHSLPDDAHKKVGARSCSSSGLLFGLTKRGL* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00350 81 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 1 62 - -
Lapu11g00350 81 SUPERFAMILY Phosphotyrosine protein phosphatases I 2 56 IPR036196 -
Lapu11g00350 81 Gene3D - 1 68 - -
Lapu11g00350 81 Pfam Low molecular weight phosphotyrosine protein phosphatase 3 47 IPR023485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00350 Lapu-Chr11 6580922 6581245 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00350 1 62 Protein tyrosine phosphatase (PTP) family AT3G44620 66.129 4.84e-24 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00350 K25307 - gmx:100527219 116.316