Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00339 ATGTGCCTCCATCTCTTCCTCTCTCTTCCTTTGCTTCCATTGTCTGGATTTGTAAGGTGGTGTGGTGGTGTTCCTGTATGCCTCCATCTACTTCTCTGTCTGAGTCCGTTTCTCGCGCTCCTTGAAGGTAAGCGCCATTTCCTCATCACCTGCGCCACTGAAAACTCCGACGACTTGATCCGTCAACTCGTTGCCGATCTCTACTCTGCCTCCCTCGACGATCAGAAACAAGCCGCCATGGAAATCCGATTACTCGCCAAGAACAAGCCGGAGAATCGACTCAAAATCGCTAAAGCAGGAGCAATCGAACCGCTGATTTCTCTCATTTCCTCGCCGGACCTCCAACTCCAGGAATACGGCGTCACCGCGATTTTGAATCTCTCGCTCTGA 390 0.5154 MCLHLFLSLPLLPLSGFVRWCGGVPVCLHLLLCLSPFLALLEGKRHFLITCATENSDDLIRQLVADLYSASLDDQKQAAMEIRLLAKNKPENRLKIAKAGAIEPLISLISSPDLQLQEYGVTAILNLSL* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00339 129 PANTHER U BOX DOMAIN-CONTAINING 59 129 - -
Lapu11g00339 129 Gene3D - 38 129 IPR011989 -
Lapu11g00339 129 SMART arm_5 89 129 IPR000225 GO:0005515
Lapu11g00339 129 SUPERFAMILY ARM repeat 56 128 IPR016024 -
Lapu11g00339 129 Pfam Armadillo/beta-catenin-like repeat 90 128 IPR000225 GO:0005515
Lapu11g00339 129 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 100 129 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00339 Lapu-Chr11 6416106 6420803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00339 60 129 U-box Gene Family AT2G23140 50.000 1.78e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00339 - - vun:114195316 155.992