Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00332 ATGTATAGCAATTTCAAAGAACAAGCAATAGAGTACGTGAAGCAAGCGGTGGATGAAGACAACAAAGGTAATTACGCGAAAGCCTTCCAACTTTACATGAACGCGTTGGAGTACTTCAAAACGCACCTCAAGTATGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACCGAGTACCTGCGTCGGGCCGAGGAGATCAGGGCCGTCCTCGACGATGGGCCCAGCGGCCCACCTTCCTCCGGGGATGCTGCAGTCGCTACCAGGCCCAAGACCAAGCCCAAGGACGGCTCCGGTGGCGATGGGGAGGATCCTGAACAGGCCAAGCTTCGGGCCGGGCTCAACTCCGCGATCGTCAGGGAAAAGCCCAACGTGAAGTGGAACGACGTGGCGGGGCTGGAGAGCGCCAAACAGGCTCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCTCAATTTTTCACCGGTAAACGACGACCTTGGAGAGCCTTTTTGTTGTACGGACCACCGGGGACGGGTAAATCGTATTTGGCCAAGGCTGTTGCAACAGAAGCGGATTCTACGTTCTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCGAAATGGCTCGTGAAAGTGCACCTTCTATCATATTCATTGATGAAATAGATTCTCTGTGTGGTCAGCGTGGAGAAGGTAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTCGTTCTAGCAGCTACGAATACACCTTATGCTCTTGACCAGGCAATAAGGCGACGTTTTGATAAGCGAATATACATACCCCTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAATTTGACCGAAAATGATTTTGAACATTTGGCTCGCAGGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGTATGTGGATTCCATGCGGACCAAAGCAACAGAGTGCAATACAAATTACAATGCAGGAGCTTGCTGCGGAAGGACTTGCTTCTAAGATCCTGCCACCACCTATATCGAGGACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGGCCGACCTCAATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGATAA 1302 0.4816 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPPSSGDAAVATRPKTKPKDGSGGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTENDFEHLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQSAIQITMQELAAEGLASKILPPPISRTDFDKVLARQRPTVSKADLNVHERFTKEFGEEG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00332 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 428 IPR027417 -
Lapu11g00332 433 FunFam vacuolar protein sorting-associated protein 4A 298 413 - -
Lapu11g00332 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Lapu11g00332 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Lapu11g00332 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Lapu11g00332 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Lapu11g00332 433 CDD MIT_VPS4 4 76 IPR045253 -
Lapu11g00332 433 SMART AAA_5 162 298 IPR003593 GO:0016887
Lapu11g00332 433 Gene3D - 6 75 - -
Lapu11g00332 433 Gene3D - 125 421 IPR027417 -
Lapu11g00332 433 SUPERFAMILY MIT domain 2 83 IPR036181 -
Lapu11g00332 433 CDD RecA-like_VPS4 124 294 - -
Lapu11g00332 433 SMART smart 2 79 IPR007330 -
Lapu11g00332 433 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
Lapu11g00332 433 Gene3D - 298 413 - -
Lapu11g00332 433 PANTHER AAA DOMAIN-CONTAINING 18 431 - -
Lapu11g00332 433 MobiDBLite consensus disorder prediction 71 109 - -
Lapu11g00332 433 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00332 Lapu-Chr11 6349761 6354443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00332 161 354 Calmodulin-binding Proteins AT3G56690 37.245 1.31e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00332 K12196 - gmx:100801165 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00332 11 6349761 6354443 Lapu11g00332 11 6349761 6354443 ECH