Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00327 ATGGAGTGCAATGTGGAGAACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCTTCATATCTAAACTCCAACACAATATCTTCTTCTTCATCATCATCTTCTTCTTTTTCTTTCACTCAGCATCAGCTTGTTCATGAAACCATCCAATTCTTGCCCATTTTAAGTGAAAAGGCCTCAAAAGATGAAGACCACCATGGAGTACAAAGTTTTGAGGTGAAAGAGGAAAAGGTTGAACAAGTGACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCATCATGAGGTTGTTGATGAGAAGATGATTTTCCATGTCAAGGAAGAAGAAGAGTCCTCCAAGAGAAGCTTCCATGGATGCTCCTTTAACCAAGAGAGAAGGTTTTGGATTCCAACTCCAGCACAGATCCTCGTTGGACCGATGCAGTTTGCTTGCTCCATATGTAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGACTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGCTACTGCTGCGCCCAGGGTTGCAAGAACAACATCAACCATCCAAGGGCCAAGCCTTTGAAGGACTTTAGAACCCTCCAAACCCATTACAAAAGAAAGCATGGCACAAAGCCCTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGGAAGTTGTGGTACTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCCCTTAAGGACCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATTACTGGTTCTGATGAAGATGAGGTTAATGCTCATCATGCATGA 957 0.4305 MECNVENNKNLYLHAPTFIEWLKPCSSPSYLNSNTISSSSSSSSSFSFTQHQLVHETIQFLPILSEKASKDEDHHGVQSFEVKEEKVEQVTVALHIGLPDSAKRHHEVVDEKMIFHVKEEEESSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDEVNAHHA* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00327 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 258 IPR013087 -
Lapu11g00327 318 SMART c2h2final6 154 176 IPR013087 -
Lapu11g00327 318 SMART c2h2final6 201 233 IPR013087 -
Lapu11g00327 318 SMART c2h2final6 238 258 IPR013087 -
Lapu11g00327 318 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Lapu11g00327 318 Gene3D Classic Zinc Finger 196 285 - -
Lapu11g00327 318 FunFam Zinc finger protein WIP2 207 289 - -
Lapu11g00327 318 SUPERFAMILY beta-beta-alpha zinc fingers 145 177 IPR036236 -
Lapu11g00327 318 Gene3D Classic Zinc Finger 153 176 - -
Lapu11g00327 318 PANTHER ZINC FINGER PROTEIN WIP2 20 309 IPR043584 GO:0003700|GO:0010468
Lapu11g00327 318 SUPERFAMILY beta-beta-alpha zinc fingers 223 258 IPR036236 -
Lapu11g00327 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00327 Lapu-Chr11 6314445 6317986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00327 4 306 C2H2 Transcription Factor Family AT1G08290 55.233 2.21e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g00327 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00327 - - gmx:100802773 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00552 5 5013281 5017081 Lapu11g00327 11 6314445 6317986 PCT