LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu11g00320	ATGTACACTCATCACCAACATCAAGGAAAGAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCACATGTTCCTTCACACGGGAAATGGATCTGGGGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTAGGGGGAGCTGACAAGGCTACTCCGAAAACGGTAATGAAACTCATGGGGATTTCAGGGCTTACTTTGTATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAGTCTGCATGGACAAAGTAATAACGCGACACACAAAATCTCCATAAATCCAGGGGCAGCAACAGACGAAAGACTAAGAGAAAACAGTGGAACGCATGTGAACAATTTAAACCTCGCTCCTCAGTCCAATAACAAAGATTTACACATCAGTGAGGCACTACAGATGCAGATAGAGGTTCAAAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTCCTGCAGCTCCGGATAGAGGCTCAAGGAAAATATCTTCAAGCTGTGCTGGAGAAGGCTCAGGAAACACTTGGTAGACAAAATTTGGGAGTAGTAGGACTTGAAGCTGCCAAACTTCAACTTTCAGATCTGGTGTCCAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTTAGAGCTGAAGGAGTTACAAGGATTTAGCCCTCACCAAACACAAACCAACCAGCCAAATGACTGTTCTATGGACAGTTGTCTCACGTCTTGTGAGGTGTCACAAAAAGAGCAAGAGATACAAAATTGGGGGATGAGCTTGAGACCCTTCAATGTCCACACATTCATGGAACGAAAGGAGGTCATAGAGGGTCCGAATCTTAACAACCTACCAAACACTGAACTCAAATGGTGTGATCCAGTGAAGAACACCTTCCTTACCCCATTGAGCAGAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGACACCGAGAATGGGAGCAGCATTAGGAAAGAATCAGTGAAACCAGTGGCTGAGAAAGTTTCTCAAGATTATGGACTGCCTTCATACTTTGCTGCACCAAAACTGGACCTAACCATTGAAGATAAAGACACTAGAAAAAGTTGTAAAGAACTGGACTTGAATGGATTCAGTTGGAACTAA	1185	0.4363	MYTHHQHQGKNIHSSSRMPIPSERHMFLHTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKSLHGQSNNATHKISINPGAATDERLRENSGTHVNNLNLAPQSNNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSDLVSKVSSQCLNSAFLELKELQGFSPHQTQTNQPNDCSMDSCLTSCEVSQKEQEIQNWGMSLRPFNVHTFMERKEVIEGPNLNNLPNTELKWCDPVKNTFLTPLSRRSPSNLSMSIGLEGDTENGSSIRKESVKPVAEKVSQDYGLPSYFAAPKLDLTIEDKDTRKSCKELDLNGFSWN*	395

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu11g00320	394	FunFam	Myb family transcription factor	45	103	-	-
Lapu11g00320	394	Gene3D	-	45	103	-	-
Lapu11g00320	394	SUPERFAMILY	Homeodomain-like	45	101	IPR009057	-
Lapu11g00320	394	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	8	280	IPR044848	GO:0003700
Lapu11g00320	394	Pfam	MYB-CC type transfactor, LHEQLE motif	150	196	IPR025756	-
Lapu11g00320	394	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	43	103	IPR017930	-
Lapu11g00320	394	Pfam	Myb-like DNA-binding domain	48	99	IPR001005	-
Lapu11g00320	394	Coils	Coil	152	172	-	-
Lapu11g00320	394	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	46	101	IPR006447	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu11g00320	Lapu-Chr11	6217988	6220885	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu11g00320	78	394	G2-like Transcription Factor Family	AT3G04030	50.151	2.87e-87	265

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Lapu11g00320		Myb_DNA-binding	2.5e-08	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu11g00320	-		-	gmx:100805237	675.241

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