Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00317 ATGGCTGAGGCGGAGGAGCTGCCCCGGTCTATTGTGCGCCGTGTTGTGAAGGATAAGCTGTCCCGTTGCTCTGAAGACGGAGAAATTTCCATCAGCAAAGATGGTCTTCTTGCATTCTCCGAGAGTGGCAGGATCTTTATCCACTACCTTTCCGCCACGGCTAATGACATATGTAAGGAGTCAAAGAGGCAGATTATCAGTGCTGAGGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTCTCTGAGTTTATTCGTCCTCTAAAAGCTTCCCTTGAAGAGTATAGGAAGAAGAATGTTGAAAAAAAAGCGGCAGTGTCAAAGGGAAAAGAAGACGAGCCAAAAAAGAAAAGGAAATTGGATGCGGAGTCTGATAAAGGTGAGGCTTCCAATAATGGTGAGTCATTTGATAAAGGAGAGGGTTCTGATAAAGGTGAGGACGAGGACAACCAATGA 453 0.4525 MAEAEELPRSIVRRVVKDKLSRCSEDGEISISKDGLLAFSESGRIFIHYLSATANDICKESKRQIISAEDVFKALEETEFSEFIRPLKASLEEYRKKNVEKKAAVSKGKEDEPKKKRKLDAESDKGEASNNGESFDKGEGSDKGEDEDNQ* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00317 150 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Lapu11g00317 150 SUPERFAMILY Histone-fold 7 127 IPR009072 GO:0046982
Lapu11g00317 150 Gene3D Histone, subunit A 1 149 IPR009072 GO:0046982
Lapu11g00317 150 FunFam DNA polymerase epsilon subunit 3 1 146 - -
Lapu11g00317 150 MobiDBLite consensus disorder prediction 98 150 - -
Lapu11g00317 150 MobiDBLite consensus disorder prediction 98 144 - -
Lapu11g00317 150 Coils Coil 58 78 - -
Lapu11g00317 150 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 4 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00317 Lapu-Chr11 6199552 6201195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00317 7 110 CCAAT-HAP3 Transcription Factor Family AT4G14540 29.808 6.25e-10 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu11g00317 CBFD_NFYB_HMF 7.2e-07 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00317 K02326 - gmx:100306382 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00317 11 6199552 6201195 Lapu11g00317 11 6199552 6201195 ECH