Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00316 ATGCCTCGGGGAAAAGCAAATCCTTCATCAGTTGCTAAGCCATCTGACACTGAGAAGCCAGCTGAATCTGATGAGAAGGTTGATTTTGAGGAGGAAAATGATCCAGAGGAAGCAATGGAAGAAGAAATTGAATATGAAGAGGTAGAAGAAGAAGTGGAAGTGGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGACCCAGAGGAGGTAGAGGTAGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAAGAAGAGGAGGAGATTGAAGAAGTGGATGAAGATGATGCCATGCAAAACCATAGCAGTGATGAAGCAAAGGTGGAAGATGAGGATGAGAAGAAAAAACATGCCGAACTCCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCATGATGTCTCAAATGGGGATTTGAAATCTTTTTGTGAGCGTATTGGGGAAGTTGCAGAGGTACGGGTAATGAAGGGAAAGCATTCCAACGAGAACAAGGGATTTGGTTTTGTGACATTTAGAAGCGTGGAATTGGCTTCTAAAGCCATTGAGGAGCTGAATAATACAGAATTTAAGGGTAAAAAAATAAAATGTTCTACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGTTGAAGATCTGAGGAAGATTGTATCTGAGATTGGACCTGGAGTTACTGGTGTGGAACTAGTCAAGGATATGAAGAACACCAACAACAACCGTGGCTTTGCTTTTATTGACTATTATAATAATGCATGTGCTGAGTATTCTAAGCTAAAGATGATGAACCCAACATTTAAGCTAGGTGAGAATGCTCCAACGGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTGCCGAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACGCCATGGGAAGATAACAAAGGTGGTTCTTCCACCCGCAAAGTCTGGACAGGAAAAGAACAGGATTGGCTTTGTACATTTTGCAGAAAGATCAAGTGCTATGAAAGCACTGAAAAATACTGAAAGATATGAATTAGAAGGTCAAGTTTTAGAGTGCTCTCTGGCAAAGCCACAGTCTGATCAAAAGTCTGGAGGATCAAACACACAGAAGCCGGGACCAGGATTGCTTCCAAGCTATCCTCCACATGTCGGTTATGGTTTGGTTGGGGGTGCCTATGGTGCTCTTGGTGCAGGATATCCTGCTCCAGGTCTTGCCCAGCCCTTGCTATATGGAGGAGGTCAAGCTCCGGCTGGAATGACCATGATGCCCATGCTTTTGGCTGATGGACGAATTGGATATGTCTTTCAACAACAAGGAATGCAGCCACAAGTCCCATCCTCGCATCATAGAGGTGGCCGGAGCGGTGGCAGTGGGGGTGGCAACAGGAATGCTGGCAGTTCTAGTAAGGGAAGGCACAACAGTGATGGTGGTCAAGGGCGCAGATACCGCCCATACTAG 1530 0.4529 MPRGKANPSSVAKPSDTEKPAESDEKVDFEEENDPEEAMEEEIEYEEVEEEVEVEEIEEEVEEEEDPEEVEVEEEEEEEEEEEEEEEEEIEEVDEDDAMQNHSSDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDVSNGDLKSFCERIGEVAEVRVMKGKHSNENKGFGFVTFRSVELASKAIEELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWGVEDLRKIVSEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNNACAEYSKLKMMNPTFKLGENAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQVLECSLAKPQSDQKSGGSNTQKPGPGLLPSYPPHVGYGLVGGAYGALGAGYPAPGLAQPLLYGGGQAPAGMTMMPMLLADGRIGYVFQQQGMQPQVPSSHHRGGRSGGSGGGNRNAGSSSKGRHNSDGGQGRRYRPY* 510
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00316 509 SUPERFAMILY RNA-binding domain, RBD 126 294 IPR035979 GO:0003676
Lapu11g00316 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 291 IPR000504 GO:0003723
Lapu11g00316 509 MobiDBLite consensus disorder prediction 380 397 - -
Lapu11g00316 509 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 292 401 - -
Lapu11g00316 509 MobiDBLite consensus disorder prediction 1 116 - -
Lapu11g00316 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Lapu11g00316 509 Gene3D - 292 399 IPR012677 -
Lapu11g00316 509 MobiDBLite consensus disorder prediction 483 497 - -
Lapu11g00316 509 Coils Coil 38 96 - -
Lapu11g00316 509 Gene3D - 60 209 IPR012677 -
Lapu11g00316 509 MobiDBLite consensus disorder prediction 380 401 - -
Lapu11g00316 509 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 6 502 - -
Lapu11g00316 509 MobiDBLite consensus disorder prediction 464 509 - -
Lapu11g00316 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Lapu11g00316 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 272 IPR000504 GO:0003723
Lapu11g00316 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 201 IPR000504 GO:0003723
Lapu11g00316 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 374 IPR000504 GO:0003723
Lapu11g00316 509 SMART rrm2_1 130 203 IPR003954 GO:0003676
Lapu11g00316 509 SMART rrm2_1 304 377 IPR003954 GO:0003676
Lapu11g00316 509 SMART rrm1_1 304 377 IPR000504 GO:0003723
Lapu11g00316 509 SMART rrm1_1 210 287 IPR000504 GO:0003723
Lapu11g00316 509 SMART rrm1_1 130 203 IPR000504 GO:0003723
Lapu11g00316 509 MobiDBLite consensus disorder prediction 100 116 - -
Lapu11g00316 509 MobiDBLite consensus disorder prediction 27 99 - -
Lapu11g00316 509 Gene3D - 210 290 IPR012677 -
Lapu11g00316 509 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 210 290 - -
Lapu11g00316 509 SUPERFAMILY RNA-binding domain, RBD 296 397 IPR035979 GO:0003676
Lapu11g00316 509 CDD RRM_SF 131 203 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu11g00316 Lapu-Chr11 6193421 6199136 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00316 131 466 Eukaryotic Initiation Factors Gene Family AT4G34110 24.934 1.65e-11 64.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00316 K13161 - gmx:100806658 686.797
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00316 11 6193421 6199136 Lapu11g00316 11 6193421 6199136 ECH