Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00287 ATGTCGGCCCCGCGCGCTCCCTCCGCCGCCGCCGCCACCGCCTCCTCCAACCCGCCCGACCAGATCATGCACTCCATGAAACGCCAACTCCCCTTCTCCTCCATGAAACCGCCCTTCGCCGCCGCCGGAGACTACCACCGTTTCGCCCCCGACCACCGTCGCAGCCTAGACCTCGACGCCGAAGCCGTGGTCGTCAAGACTCCCCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTAGATCCACTGAGCCAGCTAATAGTCCTTTCCGGACACCTGTATCAGGAAAGATAGGGAAGGGTGGCAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCTGGTTCAAATATTGGTTCTCCTTTAGGCAACAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAAGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTGGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTCAAGAACCGAATTCAATGGAAGGGACTGGATGTTTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGGGATCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACCGAAGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCTCCTCATGGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCGCAGCGGAGATACAGGATAGTCCTCAGAAGCACGATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTTGCACCCAAACTTCCATCCAGTCCAGATGTTAACAAACATCAAGGACAAGATGTTCACGGTCATAGTTCAGAGTTTACTACCTCTCAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAGTGGAATGAACTGGATCCACTTCAAGAAGATTACTGTATGACTCGCGATAACACTTCGATCCCAAGTCATTCTTCAAATGTTGGTGAAGTGTCTTCTGCATCTAAACCTACTGGAGGTTGA 1353 0.4656 MSAPRAPSAAAATASSNPPDQIMHSMKRQLPFSSMKPPFAAAGDYHRFAPDHRRSLDLDAEAVVVKTPQLKRKSEAADFEADSGDRMTPRSTEPANSPFRTPVSGKIGKGGKSSRMTKCNRLGTQTPGSNIGSPLGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDERRLDEQIREMQERLRDLSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVAPKLPSSPDVNKHQGQDVHGHSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELDPLQEDYCMTRDNTSIPSHSSNVGEVSSASKPTGG* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00287 450 Coils Coil 224 265 - -
Lapu11g00287 450 Gene3D - 140 213 IPR036388 -
Lapu11g00287 450 MobiDBLite consensus disorder prediction 9 23 - -
Lapu11g00287 450 Coils Coil 162 182 - -
Lapu11g00287 450 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Lapu11g00287 450 MobiDBLite consensus disorder prediction 72 87 - -
Lapu11g00287 450 SUPERFAMILY E2F-DP heterodimerization region 225 328 IPR037241 -
Lapu11g00287 450 FunFam E2F transcription factor 1 140 213 - -
Lapu11g00287 450 SUPERFAMILY "Winged helix" DNA-binding domain 146 209 IPR036390 -
Lapu11g00287 450 MobiDBLite consensus disorder prediction 426 450 - -
Lapu11g00287 450 MobiDBLite consensus disorder prediction 72 116 - -
Lapu11g00287 450 MobiDBLite consensus disorder prediction 1 43 - -
Lapu11g00287 450 CDD E2F_DD 222 328 IPR032198 GO:0046983
Lapu11g00287 450 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Lapu11g00287 450 PANTHER TRANSCRIPTION FACTOR E2F 89 415 IPR015633 GO:0000978|GO:0006357
Lapu11g00287 450 Pfam E2F transcription factor CC-MB domain 227 327 IPR032198 GO:0046983
Lapu11g00287 450 Gene3D - 218 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00287 Lapu-Chr11 5947148 5957826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00287 21 449 E2F-DP Transcription Factor Family AT5G22220 56.237 1.17e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lapu11g00287 E2F_CC-MB 1.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00287 K06620 - gmx:100819817 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00287 11 5947148 5957826 Lapu11g00287 11 5947148 5957826 ECH