Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00274 ATGGCGACGTACTTTCATGGTAGCACTTCGGAAATCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCGTACTCTGACGCGGCGCAACACCCAGCGCAAAACATGCTCCTCGTCAATCCCAATAACGCTAGCAACACTAGCCCCACTTCCGCCAACGCGCTCAACTTGGGTAACTTCACCCACGCGCCACCACCTCCATCTCCCAACAACCACCGTGACCAACAACAACAACAACAACACCACCACCACCACCAACACCTGATTGGGCTTACCATTCCTTCATCAAACATCATCGGATCCAATACGGCCACCGGAGATCACGCTCGCCCATCGTTCCTTGGACAACATGAATTCTCCGGCTTTCACGGCGGTGCTGCCGCTGCAACAACAGCGTCAACTTCTCGTTCTAACTATAACTTATGGGGTTCCATGTTTGATCAATCTGCTTCGAATATGGTGACAACAACAAACACTCCATCTGAAAATATGGGGTGTGTTGCTTCTGCTGTCACTGCATCGACCCAGATTGGTTTTCATAGGCCTAATCATCTGTCACTAAGCCTTTCCTCACAACAAACACCTTACAGGACTTTATCCGGGGATGTTCATGCTATATCTCCGGCGAGCCTCGGCGGCAACGATATGAGGGGTTTGCAGAACGGGGTTTCTAGCATGCATAGTGTTGTTTTGGGTTCCAAGTATTTGAAATCAGCACAAGAGCTTCTGGACGAAGTTGTGAATGTGGGGAAGGGAATTTCCAAATGGGAAGAATCTATGGAAGGGGCAAAGAAAGAGAAGATGAAGGGGAATATTGAATCAACTTCTGGGGTTGGCGATGGTTCGAGCTGTGGAGGGGAGAATAATGATGGAGGGAAACAAGGAGGTGAACTAGGCACAGCACAGAGACAAGAGCTACAGATGAAGAAGTCCAAGCTTGTGAGCATGCTCGACGAGGTGGAGCAAAGGTACCGACAGTATCACCACCAAATGCAAATTGTGGTTACATCATTTGAGCAGGCTGCGGGTGTTGGAGCGGCAAAATCTTACACAGCCCTTGCGTTAAGGACAATCTCAAAACAATTTCGGTGTCTCAAAGATGCTATCTCTTCGCAAATCAAGACAGCGAGCAAGACCTTAGGTGAAGATGATATCTTAGGAGTTAAGGTAGAAGGTTCAAGGCTTAGGTATGTTGATCATCAACTGAGACAACAACGTGCGTTGCAGCAGCTAGGAATGATCCAACACAATGCTTGGAGGCCCCAGAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTGCACCCCTATCCTAAGGACTCCGACAAGGTTATGCTTGCAAAACAAACAGGACTTACTCGGAGCCAGGTGTCTAACTGGTTTATAAATGCTCGAGTTCGGCTATGGAAGCCTATGGTGGAAGAAATGTACTTGGAAGAGGTGAAGCAAGAGCCGAACAATGGCTCCCAGGACAACAATGCAAATAGATCAAAAGAAAATAGCAAGGAGTTATGGTCAGAAGCTAATGCTGCTACACAAGAATCGGGTGGCATGAGACTTAATCGGATTATTGCTCTCCAATCAAAGGCAGAAAGTTTCAACAATAACCAAACCACTTCCCCAACAGAGATCTCCAATTCTAATTCACTCTCAACATCTCCAATGGGTGGAGGAGGAGGAGGGTCTCTCCAATCTGGTTTCCATCTTGGGGACATGCAAAGTCCAAACAAGCCAAGAAGCACTTCTGAAATGCAAAACTCTCCAGGTAGCATCCTTTCAGTGGACATGGAAATGAAGCCTCGTGGAGAGACAAACACTAGAGAAGCAACCAACACAAAGTTTAGCATTGAAAACCATGGTGGGAGTTTTGGAGCATTTCCCATGGAGGACATTGGAAGGTTCCATAATGTCACTGAACAACTGGCTCCAAGGTTTCATGGAAACGGAGTTTCTCTCACTCTTGGACTTCCACACAGTGAGAATCTTACTCTCTCGGGAACTCAACATGGATTCCTCTCACCGAATATGCACTTGGGAATGAGAACAACCAATGAAAATGAGTTTTGTGGTGCCATCAACACCCCACCTTCTTCTCATTCAGCCACCAGTTATGAGAGCATCGACATCCAAAACAGAAAGAGGTTTGCTGCGCAGTTGTTGCGGGATTTCGTGGCCTGA 2223 0.4732 MATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYSDAAQHPAQNMLLVNPNNASNTSPTSANALNLGNFTHAPPPPSPNNHRDQQQQQQHHHHHQHLIGLTIPSSNIIGSNTATGDHARPSFLGQHEFSGFHGGAAAATTASTSRSNYNLWGSMFDQSASNMVTTTNTPSENMGCVASAVTASTQIGFHRPNHLSLSLSSQQTPYRTLSGDVHAISPASLGGNDMRGLQNGVSSMHSVVLGSKYLKSAQELLDEVVNVGKGISKWEESMEGAKKEKMKGNIESTSGVGDGSSCGGENNDGGKQGGELGTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVVTSFEQAAGVGAAKSYTALALRTISKQFRCLKDAISSQIKTASKTLGEDDILGVKVEGSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNGSQDNNANRSKENSKELWSEANAATQESGGMRLNRIIALQSKAESFNNNQTTSPTEISNSNSLSTSPMGGGGGGSLQSGFHLGDMQSPNKPRSTSEMQNSPGSILSVDMEMKPRGETNTREATNTKFSIENHGGSFGAFPMEDIGRFHNVTEQLAPRFHGNGVSLTLGLPHSENLTLSGTQHGFLSPNMHLGMRTTNENEFCGAINTPPSSHSATSYESIDIQNRKRFAAQLLRDFVA* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00274 740 Gene3D - 429 507 - -
Lapu11g00274 740 Coils Coil 310 330 - -
Lapu11g00274 740 ProSiteProfiles 'Homeobox' domain profile. 423 486 IPR001356 GO:0003677
Lapu11g00274 740 MobiDBLite consensus disorder prediction 582 607 - -
Lapu11g00274 740 MobiDBLite consensus disorder prediction 282 296 - -
Lapu11g00274 740 SMART HOX_1 426 490 IPR001356 GO:0003677
Lapu11g00274 740 MobiDBLite consensus disorder prediction 549 574 - -
Lapu11g00274 740 SMART prehox3 231 378 IPR006563 -
Lapu11g00274 740 CDD homeodomain 426 487 IPR001356 GO:0003677
Lapu11g00274 740 Pfam Associated with HOX 236 377 IPR006563 -
Lapu11g00274 740 SUPERFAMILY Homeodomain-like 427 492 IPR009057 -
Lapu11g00274 740 MobiDBLite consensus disorder prediction 271 304 - -
Lapu11g00274 740 MobiDBLite consensus disorder prediction 45 65 - -
Lapu11g00274 740 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 510 - -
Lapu11g00274 740 MobiDBLite consensus disorder prediction 496 528 - -
Lapu11g00274 740 Pfam Homeobox KN domain 443 482 IPR008422 GO:0003677|GO:0006355
Lapu11g00274 740 MobiDBLite consensus disorder prediction 549 622 - -
Lapu11g00274 740 FunFam BEL1-like homeodomain protein 9 429 491 - -
Lapu11g00274 740 MobiDBLite consensus disorder prediction 45 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00274 Lapu-Chr11 5727800 5733187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00274 220 740 Homeobox Transcription Factor Family AT2G35940 48.128 6.91e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu11g00274 POX 2.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00274 - - gmx:100786883 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00593 5 5454901 5459918 Lapu11g00274 11 5727800 5733187 PCT