Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00272 ATGGGAGAAGTTGAAATTCCTCAATATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACTACTGTGACTGGGATTACATATGACAGAGAAGGCATAGAGGAGTGGTTGCGTAAGGCCAAAGATTGTGTGTGTCCTGTTACCAAACAATCACTTCCAAGAAGCTCTCAATACTTAACCCCTAACCACACACTTCGGAGGCTAATCCAAGCTTGGTGTTCAGAAAACACAGCCAATGGTGTTGATCCAATTCCAACCCCGAAGACCCCTTTAAGCATCATCCAAGTTCAGAAGCTTGTGAAGGGTCTTGATGCTCCTCGTTCTTCTGGAACATCGTTGGAGAAGTTGCATGCTTTGGCTACACAAAGCCAGAGGAACAGAACTTGCATGGCTGAGGCTGGTGTAGCCAAGGCCATGGTTAAAGTGATTAACAACAATTTCAAAGATAGAAACACAAACACCAGTTCCATAGAAGAAGCTTTGATAATTGTTCATCTGCTTTGGAACAATCACAACAGCATGAAACCTTTGGTTGGGGAGAGCTTGAACTTCATCAACTCTTTGACTTGGATTTTGAAACTTCATTTGGATGAAAACAACATTAAGATGGTAAACGAAGCAATGCCCCTTTTGAAGTTGACAATCGAAGTTGCGGATTCAACCCTTTTGGGGAATTTAAGCCTTGAATTCTTCAATGAAATGGTGAGAGTACTGAGAAAGAGAGCACTGTCTCATCAAACTATCAAATCTGCTTTGCATGTGCTTATACAAACTAGCCTTTTGGGTAGAAACAGAACGAGGATTGTTGAAGCAGGTGCAGTCACACAACTCATAGAGCTTGAGCTTGAGAAACCAGAGAAGAACATGACAGAGCTCATATTCAACCTTTTGGCTCATCTGTGTTGTTGTGCTGATGGAAGAGAACAGTTTTTGAGACATGCTGCGGCCATTGCAGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACAGATGAAAGAGCGATTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCATCAAATGAGGTTGTTCTAGAAATGTTAAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAGAAAGTAAGAGGCATTCTTAGGTTGCACTCCAATGTTTGGAACAATTCTCCCTGCATACAACTGTATTTGTTTACTAGGCACCAAAGGTGA 1233 0.4209 MGEVEIPQYFVCPISFQIMEDPVTTVTGITYDREGIEEWLRKAKDCVCPVTKQSLPRSSQYLTPNHTLRRLIQAWCSENTANGVDPIPTPKTPLSIIQVQKLVKGLDAPRSSGTSLEKLHALATQSQRNRTCMAEAGVAKAMVKVINNNFKDRNTNTSSIEEALIIVHLLWNNHNSMKPLVGESLNFINSLTWILKLHLDENNIKMVNEAMPLLKLTIEVADSTLLGNLSLEFFNEMVRVLRKRALSHQTIKSALHVLIQTSLLGRNRTRIVEAGAVTQLIELELEKPEKNMTELIFNLLAHLCCCADGREQFLRHAAAIAVVSKRVLRVSAATDERAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMVMQADCASYLKEKVRGILRLHSNVWNNSPCIQLYLFTRHQR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00272 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Lapu11g00272 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Lapu11g00272 410 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Lapu11g00272 410 SUPERFAMILY ARM repeat 116 375 IPR016024 -
Lapu11g00272 410 Gene3D - 112 396 IPR011989 -
Lapu11g00272 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 82 IPR013083 -
Lapu11g00272 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Lapu11g00272 410 SUPERFAMILY RING/U-box 4 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00272 Lapu-Chr11 5715566 5716798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00272 3 400 U-box Gene Family AT2G35930 38.861 1.07e-94 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00272 - - gmx:100787426 665.225