Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00271 ATGGATGAAATGGAGGTTCCTGCCCTTTTCCTCTGCCCAGTTTCTTTGCAGCTTATGAGAGACCCCGTGACAGTGTGCACGGGAATCACATATGACAGAGAAAACATAGAGAGATGGTTATTGTCATGCAAGAACAACAAAACCTGTCCTGTCACCAGGCAATCACTGTCACACACAGATCTTACTCCAAACCACACTCTCCAACGTTTGATCCAAGCTTGGTGCATCCACAATTATGCCTGGCTTCGACCTCAAACCTTTTCATCTCCAAAGCCAACCATTGACCAAACCGAGATTGTCAAACTTCTCCTAGAGGCAAAGAAGTTCCCGGAAAAACAGCTCAAGTGTCTTAGTAGGCTTCAATATATTGCTTTTGAAAGTGAAAGCAACAAAATCAGTTTGGAATCTGCTGGGGCAATAGATTTCTTGGCTTCTACCATGATGATTAATTCAGCTGTTATGAGTGAAGCAGCTATAGAAGTCATGTTTCGCCTAAACCCTTCTGAATCTCAGCTTAAAAACCTGATGAACAATGAAGGGATTCAGTTTGTTGAGTCTTTGCTTCATGTCTTGAAGGTTGGAAAGTGCCAATCTCGAGTTTATACAACTTTGATATTGAAGTCAGCATTTAAGGTGGCTGGTCCAACCCAATTGAACAATGTCACACCAGAGCTGTTTGTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCATTAGAGGCTTCTAAGGCAGCTTTGAAACTACTAGTGGAGTTGTGTTCATGGGGCAGGAACAAGATCAAAGCAGTTGAGAGTGGTGGGGTTTTAGTCCTCATTGAGCTACTTCTTGACGTGTCTGAAAGGAGAGCATGTGAACTCATGCTGATAGCTTTGGACAAACTTTGTGGTTGTGCAGAAGGAAGGGCTGAATTGGTGAACCATGGAGCTGGAGTGGCTGTTGTGGCAAAGAAAATTCTGAGGGTGTCACAAGTCGCAAGCGATAGAGGGGTCAAAATTTTGACCTCCATTAGTAGGCATTCAGCCACCCCTAGAGTTCTTCATGAAATGCTGCTATTTGGGGCAGTGTCAAAGTTGTGTTTGGTGCTTCAATTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCTAGGGAGACACTCAAATTGCACTCTCTGGTTTGGAGGAACTCCACATGTATTCCTGTCCCTTTACTTGCATCCTATCCATGA 1203 0.4389 MDEMEVPALFLCPVSLQLMRDPVTVCTGITYDRENIERWLLSCKNNKTCPVTRQSLSHTDLTPNHTLQRLIQAWCIHNYAWLRPQTFSSPKPTIDQTEIVKLLLEAKKFPEKQLKCLSRLQYIAFESESNKISLESAGAIDFLASTMMINSAVMSEAAIEVMFRLNPSESQLKNLMNNEGIQFVESLLHVLKVGKCQSRVYTTLILKSAFKVAGPTQLNNVTPELFVEIIRVLRDQISLEASKAALKLLVELCSWGRNKIKAVESGGVLVLIELLLDVSERRACELMLIALDKLCGCAEGRAELVNHGAGVAVVAKKILRVSQVASDRGVKILTSISRHSATPRVLHEMLLFGAVSKLCLVLQLEGCFKAKERARETLKLHSLVWRNSTCIPVPLLASYP* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00271 400 CDD RING-Ubox_PUB 7 61 IPR045210 -
Lapu11g00271 400 PANTHER WDSAM1 PROTEIN 3 392 IPR045185 GO:0061630
Lapu11g00271 400 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lapu11g00271 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Lapu11g00271 400 SUPERFAMILY ARM repeat 99 316 IPR016024 -
Lapu11g00271 400 SUPERFAMILY RING/U-box 3 79 - -
Lapu11g00271 400 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lapu11g00271 400 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Lapu11g00271 400 Gene3D - 78 384 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00271 Lapu-Chr11 5689193 5690395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00271 2 400 U-box Gene Family AT2G35930 48.642 1.29e-134 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00271 - - gmx:100778012 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00595 5 5474423 5475631 Lapu11g00271 11 5689193 5690395 PCT