Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00263 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGGAGCGTCCCTTCAACCATTTCCTCCTCAAGACCCTCAGTCACAGAAACAGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCCTCATCTTCAAAATGTAACAAAATAGCACCATTTGAGACAGTAGAGCATGAACAACCAAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTGCCTTCTGCTTACAACCGATTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAGGCTTTTAGCTCCGCAGCAAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTCAAGCAAAGTTGGACCAGGGAGAAGGAGGTGAAAAGTCCAATGGATTCTACTGA 552 0.442 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQSQKQHLSFEEPSSKELGSSSSKCNKIAPFETVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNSQAKLDQGEGGEKSNGFY* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00263 183 CDD HMG-box_SF 114 150 - -
Lapu11g00263 183 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
Lapu11g00263 183 Gene3D High mobility group box domain 98 155 IPR036910 -
Lapu11g00263 183 SUPERFAMILY HMG-box 105 153 IPR036910 -
Lapu11g00263 183 Pfam YABBY protein 7 160 IPR006780 GO:0007275
Lapu11g00263 183 MobiDBLite consensus disorder prediction 57 111 - -
Lapu11g00263 183 FunFam axial regulator YABBY 5-like 98 156 - -
Lapu11g00263 183 MobiDBLite consensus disorder prediction 57 90 - -
Lapu11g00263 183 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00263 Lapu-Chr11 5571885 5579391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00263 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 65.426 3.10e-83 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lapu11g00263 YABBY 7.5e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00263 K25796 - gmx:100500026 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00608 5 5594615 5604542 Lapu11g00263 11 5571885 5579391 PCT