Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00261 ATGAGTGATATAAGGAAGTGGTTCATGAAATCACATGACAAGGGCAACAATGCGGCTCCCTCCAAGCCTTCAAATCAACCCAAGCCTTCTTCGGATAAGCCCCAATCCGAGAAAAACGTGGCTGGAGGTCAAGAAAGTTCAGGGAGGAGGGTAACTAGCAAATATTTTAACACAAACAAGCAAAAGGTGAAAGATGAGAAAGAAACTCAGAAGCTACCTGCTAAAAGAAAGAGTGTGAAGGACAGTGAAGATATACCAGAGCCTAAGAAAATTCATGAAGATGTTGGAGATGATTCTGTCTTGCCCACTAATAAAAAGAAGTTAGCTGAGGCCACTCCGACAAAAAAATTGAAGAGTGTATCAGGTAGGGGGATTCCTAAAAGATCTGCAATTTTGGAAGAAAGTGATGAAGATGATGACAAGGATGCTGTGTCTGCTGTTAAATCTGCTGGAAGGGGTGGTGGTGGGAGAGGAGCACCTGGGCGATCAACTGGTGGGAGAGGTAGAGGAGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTTCCTGAAGGTGCTACTAACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACACTTGACAGTTTGGAACGTGAAGAAGCTGAAGATTTGATTAAACGCCATGGTGGCCGCATCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGCGATGAAGATATTGGGGGACGGAAGTCTGAAAAAGCAAAAGAGCTAGGAACTTCCTTCCTCACGGAGGATGGATTGTTTGATATGATTCGTGCATCCAAACCTGCAAAAGCTCCTTCACAAGCAGAAAAGAAATCTGTGAATAATGCTGTTGCAGTAGCATCCCAGTCAAAAGTTTCTCCAAAATCACAAGTTAAGGCCCCTCTGTCTTTGCGCTCACCTTCTAAGCAAGCTAAGCCAAAGGCTGTGACTACTGTTCAATCTTCTGTGATGTGGACAGAGAAATTTCGACCTAAAGATCCGAGGGATATCATAGGGAATCAGTCACTTATTGTACAACTTCGTAATTGGTTGAAAGCTTGGCATGAGCAATTTTTGGACACCGGTAACAAAAAACAGGGAAAAAAGCAAAATGATTCTGGTTTGAAAAAAGCTGTGTTGTTAAGTGGAACCCCTGGTATAGGGAAAACAACTTCAGCAAAGTTGGTCTGTGAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAGAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAGCTTGTAACCAATGAGGCCCTTGGTGCTAATATGCAACGGTCCAAGCTTTCCAAATCTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAAATATCAAAAATTCCTATTATCTGCATTTGTAATGACCGTTACAGCCAGAAACTTAAAAGCCTTGTGAACTACTGTTTGCTCCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAGGTTGATGGATGTTGCAAAGGCTGAAGGGCTTCAAGTTAATGAGATTGCACTTGAGGAACTAGCAGAGAGAGTTAATGGAGATATGCGAATGGCAGTAAACCAGTTACAGTATATGAGCCTCTCTATGTCAATTATCAACTATGACGACATTAGACAACGCTTTCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAAACCAAGCTTGGCTGGTAAGGATGACAATGGCATAAAACGCATGAACCTGATGGCCCGTGCTGCTGAGTCTATTGCTGACGGGGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAACTCTCTCAAACTAGTTCTACAGCAACATGCATAATTCCGTACTGCGTCCTTATTGCACGGGCAAAGAGAAATACTTGA 2115 0.4222 MSDIRKWFMKSHDKGNNAAPSKPSNQPKPSSDKPQSEKNVAGGQESSGRRVTSKYFNTNKQKVKDEKETQKLPAKRKSVKDSEDIPEPKKIHEDVGDDSVLPTNKKKLAEATPTKKLKSVSGRGIPKRSAILEESDEDDDKDAVSAVKSAGRGGGGRGAPGRSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGATNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPSQAEKKSVNNAVAVASQSKVSPKSQVKAPLSLRSPSKQAKPKAVTTVQSSVMWTEKFRPKDPRDIIGNQSLIVQLRNWLKAWHEQFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSAKLVCEELGFQAIEVNASDSRGKADSKIERGISGSKTNSVKELVTNEALGANMQRSKLSKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAEGLQVNEIALEELAERVNGDMRMAVNQLQYMSLSMSIINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQENYINYKPSLAGKDDNGIKRMNLMARAAESIADGDIVNVQIRRYRQWQLSQTSSTATCIIPYCVLIARAKRNT* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00261 704 CDD BRCT_RFC1 196 274 - -
Lapu11g00261 704 Gene3D - 594 703 - -
Lapu11g00261 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 582 IPR027417 -
Lapu11g00261 704 FunFam Replication factor C subunit 1 333 521 - -
Lapu11g00261 704 FunFam Replication factor C subunit 1 172 275 - -
Lapu11g00261 704 MobiDBLite consensus disorder prediction 59 113 - -
Lapu11g00261 704 FunFam Replication factor C subunit 1 522 593 - -
Lapu11g00261 704 FunFam Replication factor C subunit 1 594 702 - -
Lapu11g00261 704 Pfam BRCA1 C Terminus (BRCT) domain 198 273 IPR001357 -
Lapu11g00261 704 CDD HLD_clamp_RFC 522 580 - -
Lapu11g00261 704 PIRSF RFC1 1 703 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Lapu11g00261 704 Pfam Replication factor RFC1 C terminal domain 662 694 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Lapu11g00261 704 MobiDBLite consensus disorder prediction 296 325 - -
Lapu11g00261 704 MobiDBLite consensus disorder prediction 1 195 - -
Lapu11g00261 704 ProSiteProfiles BRCT domain profile. 196 277 IPR001357 -
Lapu11g00261 704 MobiDBLite consensus disorder prediction 17 58 - -
Lapu11g00261 704 Gene3D BRCT domain 173 275 IPR036420 -
Lapu11g00261 704 MobiDBLite consensus disorder prediction 180 194 - -
Lapu11g00261 704 Pfam ATPase family associated with various cellular activities (AAA) 389 488 IPR003959 GO:0005524|GO:0016887
Lapu11g00261 704 Gene3D - 522 592 - -
Lapu11g00261 704 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 16 695 - -
Lapu11g00261 704 CDD AAA 386 485 - -
Lapu11g00261 704 Gene3D - 333 521 IPR027417 -
Lapu11g00261 704 SUPERFAMILY post-AAA+ oligomerization domain-like 593 694 IPR008921 GO:0003677|GO:0006260
Lapu11g00261 704 SMART AAA_5 385 523 IPR003593 GO:0016887
Lapu11g00261 704 SUPERFAMILY BRCT domain 196 277 IPR036420 -
Lapu11g00261 704 SMART BRCT_7 198 276 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00261 1 696 Core DNA Replication Machinery Family AT5G22010 68.175 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00261 K10754 - gmx:100790070 1167.14