Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00249 ATGGAGTGGCAAAGAGGCCACACCGTAGGCCGGGGCTCGTCTGCCACTGTCTCCACCGCCTCTTGCTGTGCCGGTGGCGGTGTATTTGCCGTGAAGTCAGCGGAGCTGTCTCAGTCAGAGTCTTTGAAAAGGGAGCAAAAGATTTTGTCCTCTATAAGTAGTCCTTATGTGGTTGCATACAAAGGGTGTGACATTACCATGGACAACTACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTTGGCACGGTTGCTCAGGCGACTCGCCGGCACGGTGGCCGGCTCGAGGAGGCGACTATAGCACGCTACACCAGGCAAATTTTGCAGGGGCTAGAGTACTTGCATTCAAAAGAATTGGTGCATTGTGACATCAAGGGTGCTAATATCTTAATTGGTGAAGATGGGGTGAAAATTGGTGACTTGGGGTGTGCCAAGAGTGTGGTGGATTCCGCGGTGGTGATCGGCGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGCACTGTGGTTGAAATGGCCACAGGCGGTGCACCATGGCCTGGTGTGGAAGACCCTTTTTCGGTGCTTTATCATATTGCATATTCTAGTGAAGTGCCTGAGATTCCTTGTTTTCTATCTAAGGAAGCAAAGGATTTTTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAGGGCTAGTGAGCTTTTGAAGCATCCATTTATTGGAAAATTATGTTCCAATAGTAAGGAAGTTTTGGAATCTAATTCAAGTTCCCCAACCAGTGTTCTTGAGCAAGGCTTTTGGAGCTCTGTGGAAGAGTCAGAAAGTGTTGGCAATTTGATTCACAACCCAAGAAAAAATCAACTTTTGGCTGCTGGGAGGATCAGAATGTTGGCTCTGTCTTCTGGGGTAGCCTGTTGGGCAAAACATGATGATGAAAATTGGATCACAGCCAGAGGGAATGGAGTGAAAGGTTTTGGCAATTGTGGGTCAGGGACAGCTTCTGCTAGTCATGTGTTGTCTCACTAG 1065 0.4948 MEWQRGHTVGRGSSATVSTASCCAGGGVFAVKSAELSQSESLKREQKILSSISSPYVVAYKGCDITMDNYKLLFNLFMEYMPFGTVAQATRRHGGRLEEATIARYTRQILQGLEYLHSKELVHCDIKGANILIGEDGVKIGDLGCAKSVVDSAVVIGGTPMFMAPEVARGEEQGCASDIWSLGCTVVEMATGGAPWPGVEDPFSVLYHIAYSSEVPEIPCFLSKEAKDFLGKCLRRNPQERWRASELLKHPFIGKLCSNSKEVLESNSSSPTSVLEQGFWSSVEESESVGNLIHNPRKNQLLAAGRIRMLALSSGVACWAKHDDENWITARGNGVKGFGNCGSGTASASHVLSH* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00249 354 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Lapu11g00249 354 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Lapu11g00249 354 FunFam Mitogen-activated protein kinase kinase kinase 17 2 306 - -
Lapu11g00249 354 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 285 - -
Lapu11g00249 354 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00249 354 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lapu11g00249 354 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00249 354 CDD STKc_MAPKKK 2 253 - -
Lapu11g00249 354 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00249 354 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lapu11g00249 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00249 Lapu-Chr11 5447598 5448665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00249 1 333 MAP Kinase Kinase Kinase AT1G05100 48.725 2.45e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lapu11g00249 Pkinase 8.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00249 K20716 - gmx:100819665 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00249 11 5447598 5448665 Lapu6g01609 6 15969105 15970469 ECH
Lapu11g00249 11 5447598 5448665 Lapu11g00249 11 5447598 5448665 ECH
Lapu11g00249 11 5447598 5448665 Lapu3g00120 3 1463704 1464920 ECH
Lapu5g00622 5 5780621 5781793 Lapu11g00249 11 5447598 5448665 PCT