Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00229 ATGGTTATGGGGAGAACACTGTTCCTCTTGGTTTTGTGCTTGTGGATTCCCTTGGAAGTGGTGGGGAGGAAAGAACCTTCTTCATCTACCAGCGTGAATTCCACTGTTTCTTCAAGACCGAGGGTTGTGAAATTTGGAGCCCTCTTCCCTGTGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTTATTTTGCACAGTACAAATTGCAGTGCGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTATCATCTGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCAACTGATCCCACTCTATCTGCTCTACAATACCCATATTTTATCCGCACAACTCAGAACGACTATTTTCAGATGTATGCAGTTTCAGCCTTTATTGATTACTACAGATGGAGGGAGGTAATTGCCATCTATGTAGATGATGACAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTTTCTCCTGGGGCCTCAGAAACTGATATCAGTAACTTGTTAAATGAAGTGAACTTGATGGAATCGCGGGTCTATGTTCTGCATGTGAATCCTGATAATGGTTTAGCAATTTTCTCTATTGCCAAGAAGCTCAGAATGATGGGCAGCGGCTACGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTTCGAGTCACATGACCCTGGCACAATGGATCTCTTACAAGGGATTGTGGCTTTTCGTCATTACATTCCTGATACTGATCTCAAGAAGAACCTTCTCTCCAGGTTGAAAAGCCAAAGAGCCAAAGAGACTGTTAGCTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAATGAGGGTGGAAATATATCTTTCTCCAGTGACCCTAAGTTGCAAGACACAAATGGAAGCATGTTGCATTTAGCGTCACTTCGTACCTTTGACGGTGGTCCTCAGTTTCTCCAGACAATTTTGGAAATGAACTTCACTGGTGTGAGTGGTCAATTTGAGTTTGACATGGACAAGAATTTAGTTCATCCAGCATATGAAATTCTCAATATTGGTGGTAGTGGTTCCCGTAGAATTGGTTATTGGTCTAATCATTCTGGTCTGTCAGTTATAGCTCCTGAAACTTTACATCTGGAAAAAGCGTTAAACACATCTTTGCTGAGAAATCAACAACTGTACAGTGTGTTATGGCCTGGAGAGGTTACAACTACACCAAGGGGGTGGGTGTTTCCGAACAATGGACAGCCACTAAGGATAGCAGTTCCAAACCGAGTGAGCTACAAGGACTTTGTTTCTAAGGACAAGAACCCGCCAGGGGTACAAGGCTATTGCATTGACGTCTTTGAAGCAGCCTTAAAATTGTTGCCTTACCCTGTCCCACGAAAATACATGTTATTCGGAAATGGTGAAAGGAATCCTAACTACGACGAGCTTGTGGAACAAGTTGCAGAAGATAAATTTGATGCCGTTGTTGGAGATGTTACAATTATCACGAACAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTTGTTCCTTTTGAGGAGCAGAAGTCAAGCCCTTGGTCTTTCCTTGTGCCATTCACTACTGAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACCGCCTCAATCCTGAGTTCCGGGGTTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCTCACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGAAGAAACTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAAGTACTCAACTGATTGGAATTCAAGAGGGTTCATTTGCACGGAAGTATCTTGTAGATGATCTCAATATAGCTGAATCTAGAATAGTTACGTTGAAAAACATGGAGGATTATATTGATGCCCTTCAAAGAGGCCCTAAAGCTGGAGGGGTTGTGGCAGTTGTTGACGAGCTTCCTTATATTGAGGTCTTGATGTCCACCACTCACTGTAAGTTCAGAACTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACTGCCATTCTTCAACTATCTGAGAGTGGGGATCTGCAAAGGATTCATGACAAATGGCTTAATAAAAAGGAGTGTACAACCGTTGATGTTGATTCAAACAAACTAGATCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTGTCATTGCTCTGATTATTTTCTTTGCTAGAATCTTCTGTCAATATAACAAATTCATCCCACAGTCTGAGAACACTGATGAGGAAATTCAACCAGTCAGGAGGTCTAGACGCCCAAGCAGAACTCCTAGCCTCAAGAAGTTGATGGTATTTGTAGATAAAAGGGAAGCAGAAGTCAAAGAGATACTTAGGGAAAACAAAAAAAGGAGACACAGCCAAAGCTTGGATGATCATTCTGTTTCATCAGCCATCTAG 2808 0.4245 MVMGRTLFLLVLCLWIPLEVVGRKEPSSSTSVNSTVSSRPRVVKFGALFPVDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHIISHVVNELHVPLLSFGATDPTLSALQYPYFIRTTQNDYFQMYAVSAFIDYYRWREVIAIYVDDDNGRNGISVLGDALSKKRAKISYKAAFSPGASETDISNLLNEVNLMESRVYVLHVNPDNGLAIFSIAKKLRMMGSGYVWIATDWLPSVLDSFESHDPGTMDLLQGIVAFRHYIPDTDLKKNLLSRLKSQRAKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSSDPKLQDTNGSMLHLASLRTFDGGPQFLQTILEMNFTGVSGQFEFDMDKNLVHPAYEILNIGGSGSRRIGYWSNHSGLSVIAPETLHLEKALNTSLLRNQQLYSVLWPGEVTTTPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDKNPPGVQGYCIDVFEAALKLLPYPVPRKYMLFGNGERNPNYDELVEQVAEDKFDAVVGDVTIITNRTRIVDFTQPFMPSGLVVVVPFEEQKSSPWSFLVPFTTEMWCVTGAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVKKLSSQIEGIDSLISSTQLIGIQEGSFARKYLVDDLNIAESRIVTLKNMEDYIDALQRGPKAGGVVAVVDELPYIEVLMSTTHCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNKKECTTVDVDSNKLDLTSFWGLFLICGIACVIALIIFFARIFCQYNKFIPQSENTDEEIQPVRRSRRPSRTPSLKKLMVFVDKREAEVKEILRENKKRRHSQSLDDHSVSSAI* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00229 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 885 IPR015683 -
Lapu11g00229 935 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Lapu11g00229 935 MobiDBLite consensus disorder prediction 914 935 - -
Lapu11g00229 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 247 270 - -
Lapu11g00229 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Lapu11g00229 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Lapu11g00229 935 Gene3D - 62 406 - -
Lapu11g00229 935 Gene3D - 590 715 - -
Lapu11g00229 935 Gene3D - 716 825 - -
Lapu11g00229 935 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Lapu11g00229 935 Gene3D - 158 431 - -
Lapu11g00229 935 Pfam Ligand-gated ion channel 823 852 IPR001320 GO:0015276|GO:0016020
Lapu11g00229 935 Pfam Bacterial extracellular solute-binding proteins, family 3 490 822 IPR001638 -
Lapu11g00229 935 FunFam Glutamate receptor 717 825 - -
Lapu11g00229 935 CDD GluR_Plant 478 821 - -
Lapu11g00229 935 SUPERFAMILY Periplasmic binding protein-like II 455 823 - -
Lapu11g00229 935 Gene3D - 475 589 - -
Lapu11g00229 935 FunFam Glutamate receptor 158 324 - -
Lapu11g00229 935 CDD PBP1_GABAb_receptor_plant 44 433 IPR044440 -
Lapu11g00229 935 PIRSF IGluLR_plant 1 934 IPR017103 -
Lapu11g00229 935 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Lapu11g00229 935 FunFam Glutamate receptor 591 721 - -
Lapu11g00229 935 FunFam Glutamate receptor 475 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00229 Lapu-Chr11 5172992 5178914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00229 39 788 Ion Channels AT1G05200 67.467 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00229 K05387 - gmx:100802782 1628.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00229 11 5172992 5178914 Lapu11g00229 11 5172992 5178914 ECH
Lapu11g00229 11 5172992 5178914 Lapu5g00632 5 5979169 5994011 PCT